RNA id: TCONS_00033659


Basic Information

Item Value
RNA id TCONS_00033659
length 349
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_015863
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 46194327 ~ 46332513 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTTTTTTTGCTAACGTTAGTCCAATTGCAAATGAATCGTGTAAACGCAGCTTGTGACTGACTACTGACTTCTGAGATTAACATCAAACATCAGTCCTTCATTAAAGAACAGCGCAAACGATTCCAAAACCATCCAAAATCAGTGTGCTACATACAAAAACCGGCCTGGAATGTAGTAATTGAGTGGATCGCTGTGACCGAGATTCCAAACGGAGAGTAAGCGGTGCACTGTAAATCCATTTCGGGATTTCCAACTCATCTCTTGCAGATGACAAAAACCGCTAAAGTTGTCACCTTAGCAAGCGCTGAAGGATCGAGCCATTTTACTCTCCTACACGAGCAAATTAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033658 lncRNA upstream 134326 46056806 ~ 46060001 (+) True XLOC_015862
TCONS_00033298 lncRNA upstream 725742 45468067 ~ 45468585 (+) True XLOC_015847
TCONS_00033297 lncRNA upstream 732353 45461133 ~ 45461974 (+) True XLOC_015846
TCONS_00033657 lncRNA upstream 760699 45432582 ~ 45433628 (+) True XLOC_015843
TCONS_00033656 lncRNA upstream 1205034 44984483 ~ 44989293 (+) True XLOC_015832
TCONS_00033663 lncRNA downstream 435050 46767563 ~ 46814415 (+) False XLOC_015868
TCONS_00033664 lncRNA downstream 435064 46767577 ~ 46814415 (+) False XLOC_015868
TCONS_00033300 lncRNA downstream 444260 46776773 ~ 46813717 (+) False XLOC_015868
TCONS_00033299 lncRNA downstream 444260 46776773 ~ 46813717 (+) True XLOC_015868
TCONS_00033665 lncRNA downstream 497721 46830234 ~ 46842919 (+) False XLOC_015869
TCONS_00031504 mRNA upstream 9737 46032678 ~ 46184590 (+) True XLOC_015861
TCONS_00031503 mRNA upstream 181583 46009507 ~ 46012744 (+) True XLOC_015860
TCONS_00031502 mRNA upstream 273124 45918939 ~ 45921203 (+) True XLOC_015859
TCONS_00031501 mRNA upstream 387960 45696743 ~ 45806367 (+) False XLOC_015858
TCONS_00031506 mRNA downstream 78566 46411079 ~ 46489869 (+) True XLOC_015866
TCONS_00031507 mRNA downstream 257285 46589798 ~ 46728027 (+) False XLOC_015867
TCONS_00031508 mRNA downstream 257307 46589820 ~ 46728000 (+) True XLOC_015867
TCONS_00031511 mRNA downstream 916666 47249179 ~ 47249425 (+) True XLOC_015875
TCONS_00031513 mRNA downstream 1139134 47471647 ~ 47516648 (+) False XLOC_015878
TCONS_00031495 other upstream 628516 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031468 other upstream 1269651 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031458 other upstream 1629833 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031447 other upstream 1840760 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031434 other upstream 2891245 43279601 ~ 43303082 (+) True XLOC_015812
TCONS_00031509 other downstream 780183 47112696 ~ 47113654 (+) True XLOC_015873
TCONS_00031510 other downstream 816420 47148933 ~ 47149569 (+) True XLOC_015874
TCONS_00031532 other downstream 1609678 47942191 ~ 47943492 (+) True XLOC_015885
TCONS_00031539 other downstream 1931237 48263750 ~ 48264602 (+) True XLOC_015891
TCONS_00031564 other downstream 3314445 49646958 ~ 49647989 (+) True XLOC_015908

Expression Profile

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