RNA id: TCONS_00033664



Basic Information


Item Value
RNA id TCONS_00033664
length 1276
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id XLOC_015868
representative False

Chromosome Information


Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 46767563 ~ 46814415 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTTCTGTGTGGAAGCCATGTCAGACATGTGCTTTCTCTGAAAATCTAAAGCATCCACCTAAAATCATCATAGAGGCAATGCTGAGCATCTCATTTGACCCGGCGCTGAACGGGTGACAGTCTGAGCCTTTTCTCCTCCAGGTCGTGACACGAGGGCTCAAACCCACAGCTGTGTCATAGACAGGTGCACTGCGTCATGACTGCCAAAGCTACCAATAAATCACCAGATTGTATAGGGCTGACGGAATGTTTACCTGTTGGTGCCACTTGACAAATCCCACTCCATGAGATTCTCATCCTAGGATGTGATCATTCTGATCTCTTCTCAAGATACAGTCAGGCTGGATATGTGATCTGGATCTGGAAAGGATTGGCAGAATCCAGACATGCCCTGCTGCTGAATCATGCCAGTGGGATTATGGGATTCCTCACAATGAAAGAACAGATTTAAACATACACATCCATTCTTCATGGTCGCGGTGAAGGCCTTCAACCCTGCAGGTGGTGAATTAAATCTACGGTGAGATCACAGATGGGTTTGTCTCAGCTACTAACACAGCCtattgtgtgcgtgcgtgcatgtgtgtgtgggtttgtgtacCCATATTTATTATGGTTCCTGGACTTGTGGTAATGACACTTTCATTGAGTGGATTGGGCAGAGACAGATGGGCCCTGGTTAAGTCTAGTTTTTAAGGTGTTTTCACATTGCCTTTTTTTTTGCCTCACTTGCTCACTTTAGtcatttgtaaaaattaatggttatttaaaattaaatgtatgcatttgtaCCCTAATATAGTACCAGTgatttgttctgaagacaatagAGTATAATATTAAGGGTGCCTATTGTAACGTATGAGTCAGAGTACAGTGGAGTTGAGGGTCCAAACGCAGTTTATTTACAGCTTAGTCAGGCTTGTGACAGTCAAACATGACATGAAACAGTAACATGAgggtaaattaaaaaatgtagacGTGGTTACAGACAGAAGTCGGTGTAGGCAGCAAACaggacaaaacaaaaatcaaaaaccaCGGAAGGACAAGGCAAAGAAAAAGCTTAGAAATGTTACAGGGGAGGAAGACTCAGCactgtatgtgtgaatgtaaggtgtactgtatatatagtcCTGGTAATCAGTTTATGTTAAGCttcctggtgtgtgtgtgtgtggaatcagggagagaactggaactggtgtgtatgtgaggtgcatgatgggatttgtagttttcCAGCAATCTGTAACTGCTGATTTTGACATTAGTAT

Function


GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00033660 lncRNA upstream 435064 46194327 ~ 46332513 (+) False XLOC_015863
TCONS_00033659 lncRNA upstream 435064 46194327 ~ 46332513 (+) True XLOC_015863
TCONS_00033661 lncRNA upstream 449794 46280702 ~ 46317783 (+) False XLOC_015864
TCONS_00033662 lncRNA upstream 454771 46280828 ~ 46312806 (+) True XLOC_015864
TCONS_00033658 lncRNA upstream 707576 46056806 ~ 46060001 (+) True XLOC_015862
TCONS_00033665 lncRNA downstream 15819 46830234 ~ 46842919 (+) False XLOC_015869
TCONS_00033301 lncRNA downstream 22608 46837023 ~ 46843007 (+) True XLOC_015869
TCONS_00033666 lncRNA downstream 32448 46846863 ~ 46882199 (+) False XLOC_015870
TCONS_00033667 lncRNA downstream 36278 46850693 ~ 46882199 (+) False XLOC_015870
TCONS_00033668 lncRNA downstream 46414 46860829 ~ 46865650 (+) False XLOC_015870
TCONS_00031507 mRNA upstream 39550 46589798 ~ 46728027 (+) False XLOC_015867
TCONS_00031508 mRNA upstream 39577 46589820 ~ 46728000 (+) True XLOC_015867
TCONS_00031506 mRNA upstream 277708 46411079 ~ 46489869 (+) True XLOC_015866
TCONS_00031504 mRNA upstream 582987 46032678 ~ 46184590 (+) True XLOC_015861
TCONS_00031503 mRNA upstream 754833 46009507 ~ 46012744 (+) True XLOC_015860
TCONS_00031511 mRNA downstream 434764 47249179 ~ 47249425 (+) True XLOC_015875
TCONS_00031513 mRNA downstream 657232 47471647 ~ 47516648 (+) False XLOC_015878
TCONS_00031514 mRNA downstream 657528 47471943 ~ 47515390 (+) False XLOC_015878
TCONS_00031515 mRNA downstream 675264 47489679 ~ 47515390 (+) True XLOC_015878
TCONS_00031516 mRNA downstream 767582 47581997 ~ 47585197 (+) False XLOC_015879
TCONS_00031505 other upstream 478581 46288860 ~ 46288996 (+) True XLOC_015865
TCONS_00031495 other upstream 1201766 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031468 other upstream 1842901 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031458 other upstream 2203083 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031447 other upstream 2414010 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031509 other downstream 298281 47112696 ~ 47113654 (+) True XLOC_015873
TCONS_00031510 other downstream 334518 47148933 ~ 47149569 (+) True XLOC_015874
TCONS_00031532 other downstream 1127776 47942191 ~ 47943492 (+) True XLOC_015885
TCONS_00031539 other downstream 1449335 48263750 ~ 48264602 (+) True XLOC_015891
TCONS_00031564 other downstream 2832543 49646958 ~ 49647989 (+) True XLOC_015908

Expression Profile


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