RNA id: TCONS_00033665


Basic Information

Item Value
RNA id TCONS_00033665
length 336
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id XLOC_015869
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 46830234 ~ 46843007 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGTCGTTACTTTGATGCACTTGAACCCCGttatcatggtcaactcctctctgcatctcaagtccactgacgaaCCACTTGGCAAAGTGATAACAACAGGAAAGCTGTCCAtagggagGCTCTGCCGGATGACTGGAGTATGGCCAGCCTCCTTCTCTCAGAAAGCAAGCAGAGAGGATGATATGGAGAATCTCACGAGAGACAAAGAGTGAGTCGGTGGCTGCTGGTGTACATTTACTGAAGCCAGGCTGGTCAGAGAGCATTCTCAACAGAGATGCAGGTCAAACTCATTTGCAGGGCTCTATGAGAGGCTAGCTGAAGCACACAGCGGTTCTGC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033663 lncRNA upstream 15819 46767563 ~ 46814415 (+) False XLOC_015868
TCONS_00033664 lncRNA upstream 15819 46767577 ~ 46814415 (+) False XLOC_015868
TCONS_00033300 lncRNA upstream 16517 46776773 ~ 46813717 (+) False XLOC_015868
TCONS_00033299 lncRNA upstream 16517 46776773 ~ 46813717 (+) True XLOC_015868
TCONS_00033660 lncRNA upstream 497721 46194327 ~ 46332513 (+) False XLOC_015863
TCONS_00033666 lncRNA downstream 3944 46846863 ~ 46882199 (+) False XLOC_015870
TCONS_00033667 lncRNA downstream 7774 46850693 ~ 46882199 (+) False XLOC_015870
TCONS_00033668 lncRNA downstream 17910 46860829 ~ 46865650 (+) False XLOC_015870
TCONS_00033302 lncRNA downstream 22327 46865246 ~ 46873744 (+) False XLOC_015870
TCONS_00033303 lncRNA downstream 29550 46872469 ~ 46877103 (+) False XLOC_015870
TCONS_00031507 mRNA upstream 102207 46589798 ~ 46728027 (+) False XLOC_015867
TCONS_00031508 mRNA upstream 102234 46589820 ~ 46728000 (+) True XLOC_015867
TCONS_00031506 mRNA upstream 340365 46411079 ~ 46489869 (+) True XLOC_015866
TCONS_00031504 mRNA upstream 645644 46032678 ~ 46184590 (+) True XLOC_015861
TCONS_00031503 mRNA upstream 817490 46009507 ~ 46012744 (+) True XLOC_015860
TCONS_00031511 mRNA downstream 406260 47249179 ~ 47249425 (+) True XLOC_015875
TCONS_00031513 mRNA downstream 628728 47471647 ~ 47516648 (+) False XLOC_015878
TCONS_00031514 mRNA downstream 629024 47471943 ~ 47515390 (+) False XLOC_015878
TCONS_00031515 mRNA downstream 646760 47489679 ~ 47515390 (+) True XLOC_015878
TCONS_00031516 mRNA downstream 739078 47581997 ~ 47585197 (+) False XLOC_015879
TCONS_00031505 other upstream 541238 46288860 ~ 46288996 (+) True XLOC_015865
TCONS_00031495 other upstream 1264423 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031468 other upstream 1905558 44923799 ~ 44924676 (+) True XLOC_015830
TCONS_00031458 other upstream 2265740 44564378 ~ 44564494 (+) True XLOC_015827
TCONS_00031447 other upstream 2476667 44352673 ~ 44353567 (+) False XLOC_015820
TCONS_00031509 other downstream 269777 47112696 ~ 47113654 (+) True XLOC_015873
TCONS_00031510 other downstream 306014 47148933 ~ 47149569 (+) True XLOC_015874
TCONS_00031532 other downstream 1099272 47942191 ~ 47943492 (+) True XLOC_015885
TCONS_00031539 other downstream 1420831 48263750 ~ 48264602 (+) True XLOC_015891
TCONS_00031564 other downstream 2804039 49646958 ~ 49647989 (+) True XLOC_015908

Expression Profile

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