RNA id: TU457498


Basic Information

Item Value
RNA id TU457498
length 1147
RNA type TUCP
GC content 0.43
exon number 3
gene id G403104
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 43544687 ~ 43548274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGATTGAGTGTCCAACATGCATCCTGCCACTGAGGTGCATTTTTGGACAGACTGTACACCTCTGGACGACTACTGTTTCAGACTGATAGCAGCACTGCAGACCCTCATcatcagacagacacagggagaggaCACTGATCCAATCTTGGCAAAAATGAGCTTGGCTCGGATCCATGATAAACACAAGCTAAAGAAATACTGGGAGGAGAAAATCGAAAGTCACAGCGATATAATGGGGAGTGAGGAATCCAGAATGAagagcagtgctttatcaaaGCTGCGGGAAGAGTGGCTCAGGAGGCTGAAGCTTCGGAACCAGCAGCTGGAGCTTTTCGAAGAGAAACACATCAGGAGGGCCAAGATGTCCCAACAGGCCTTCAAGATACCCAGTCAATGACTACTCGAATCTACATTCTAGAATCTACATCATTCTAAGCCATCTGACTGAGGTCATGACACGTAGATTAGCCTGGCTGCTATCTCTTGTTCAGATACTACATTCCACTCATTGCAACTCCTGTCATTTGCCAAAGACAATCTTTGGCAAATGACGGGAGTGACAAGGAGTGGATTATTAGCTTAAAAAAAGACTGGTACTCAGACTAATGATGTAGGGTTAACTAGGACTAGCTTCTCCATTTCAGATGATGACATTACGACTATAGATTGAGGGGAAATACTGTAACTGAAGTGAAGTTTACTTCTTGCGAGGGAGACGGTATGGCAGAAAGTCAAATGGATGGGATGTCGCCGAATGATTAGTTGCAGAGCCATGCTGTACAGACTTTGTCATTAACACTCATGTCGTAGTTTTGAGGCGACCATCTGTTGTGCAGTTAAATAAGTGCAGGGGAGTATGTGAAGACTTGACTGTACATCAGAGTGACAGTCGTGGTGACAGGTGGGGTAATTATTTGATTTTTGTGTCGGAGGAATATACAACGTGATCGGGAGGAAACATGATGAAGATTGACAGAATATGGTATGTTTTCTTTTTCAAGAAAGAAAAGTATGGAAAGTTCAGAGAAACCATAGAAATGTGTTAATGTCCCAATTTCCGGGCTTAAATATAGATAGAATTTCATAATGTTTAACATAATTTATCTGCAACATTAAAAGAAGAACACGAAGATGTGTTCCGGCCA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457492 lncRNA downstream 6902 43535853 ~ 43537785 (-) False G403100
TU457493 lncRNA downstream 6902 43536923 ~ 43537785 (-) True G403100
TU457383 lncRNA downstream 165839 43378575 ~ 43378848 (-) True G402996
TU457380 lncRNA downstream 166538 43373829 ~ 43378149 (-) True G402995
TU457322 lncRNA downstream 183865 43357656 ~ 43360822 (-) True G402952
TU457505 lncRNA upstream 10364 43558638 ~ 43558841 (-) True G403111
TU457528 lncRNA upstream 27686 43575960 ~ 43576188 (-) True G403134
TU457531 lncRNA upstream 29416 43577690 ~ 43577924 (-) True G403137
TU457608 lncRNA upstream 54799 43603073 ~ 43662237 (-) True G403212
TU457680 lncRNA upstream 144094 43692368 ~ 43692651 (-) True G403283
XM_021603034.2 mRNA downstream 70095 43389592 ~ 43474592 (-) False LOC110523902
XM_021603035.2 mRNA downstream 70095 43389592 ~ 43474592 (-) False LOC110523902
XM_021603036.2 mRNA downstream 70095 43389592 ~ 43474592 (-) False LOC110523902
XM_036977626.1 mRNA downstream 70095 43390842 ~ 43474592 (-) True LOC110523902
XM_036977627.1 mRNA downstream 109114 43389592 ~ 43435573 (-) False LOC110523902
XM_036977628.1 mRNA upstream 251813 43800087 ~ 43959401 (-) False LOC110523906
XM_021603042.2 mRNA upstream 251813 43800087 ~ 43997359 (-) False LOC110523906
XM_021603043.2 mRNA upstream 251813 43800087 ~ 43997360 (-) True LOC110523906
XM_021603046.2 mRNA upstream 781653 44329927 ~ 44353902 (-) False LOC110523908
XM_036977629.1 mRNA upstream 781653 44329927 ~ 44368798 (-) True LOC110523908
TU455589 other downstream 1509046 42033444 ~ 42035641 (-) False plac8.2
TU455590 other downstream 1509046 42033926 ~ 42035641 (-) True plac8.2
TU455588 other downstream 1509095 42033371 ~ 42035592 (-) False plac8.2
TU455587 other downstream 1509095 42033444 ~ 42035592 (-) False plac8.2
TU455586 other downstream 1509095 42033926 ~ 42035592 (-) False plac8.2
TU458800 other upstream 825224 44373498 ~ 44373874 (-) True G404357
TU458967 other upstream 1091527 44639801 ~ 44640045 (-) True G404520
TU459112 other upstream 1213341 44761615 ~ 44762033 (-) True G404649
TU459431 other upstream 1449962 44998236 ~ 44998709 (-) True G404935
TU459827 other upstream 1643258 45191532 ~ 45192467 (-) True G405292

Expression Profile