RNA id: TU458802


Basic Information

Item Value
RNA id TU458802
length 230
lncRNA type intronic
GC content 0.38
exon number 1
gene id G404359
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 44376551 ~ 44376780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAATCACAACAACATGCTGACTTCTGCCCCATGGAAGCGTGCATAAAGTTTTTGTGAagttgtcagctaacccatctattGAACTATGAGCCAACTGTCCTAGCGGACTGCGCCACCAATCAGTCATAGTAGTTGAGAAAAAATACAAGGAATCGAGATGACTACTATTGTCATCTATTTCTTATTACATTGGATGTAGCTATGAATATAAAAAGGTATAATCCTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458801 lncRNA downstream 1012 44375256 ~ 44375539 (-) True G404358
TU458738 lncRNA downstream 48901 44325754 ~ 44327650 (-) True G404299
TU458766 lncRNA downstream 83586 44288124 ~ 44292965 (-) True G404323
TU458497 lncRNA downstream 108729 44267519 ~ 44267822 (-) True G404082
TU458486 lncRNA downstream 117851 44258432 ~ 44258700 (-) True G404071
TU458803 lncRNA upstream 43 44376823 ~ 44377041 (-) True G404360
TU458822 lncRNA upstream 16248 44393028 ~ 44398464 (-) True G404379
TU458741 lncRNA upstream 22081 44398861 ~ 44400018 (-) True G404301
TU458852 lncRNA upstream 75201 44451981 ~ 44477608 (-) True G404407
TU458843 lncRNA upstream 176514 44553294 ~ 44553582 (-) True G404398
XM_036977629.1 mRNA downstream 7753 44329927 ~ 44368798 (-) True LOC110523908
XM_021603046.2 mRNA downstream 22649 44329927 ~ 44353902 (-) False LOC110523908
XM_021603043.2 mRNA downstream 379191 43800087 ~ 43997360 (-) True LOC110523906
XM_021603042.2 mRNA downstream 379192 43800087 ~ 43997359 (-) False LOC110523906
XM_036977628.1 mRNA downstream 417150 43800087 ~ 43959401 (-) False LOC110523906
XM_021603063.2 mRNA upstream 85878 44462658 ~ 44465814 (-) False LOC110523915
XR_005051742.1 mRNA upstream 85878 44462658 ~ 44465814 (-) False LOC110523915
XR_005051743.1 mRNA upstream 85878 44462658 ~ 44465814 (-) False LOC110523915
XM_021603061.2 mRNA upstream 85878 44462658 ~ 44466770 (-) True LOC110523915
XM_021603057.2 mRNA upstream 123971 44500751 ~ 44551515 (-) False LOC110523912
TU458800 other downstream 2677 44373498 ~ 44373874 (-) True G404357
TU457498 other downstream 828277 43544687 ~ 43548274 (-) True G403104
TU455589 other downstream 2340910 42033444 ~ 42035641 (-) False plac8.2
TU458967 other upstream 263021 44639801 ~ 44640045 (-) True G404520
TU459112 other upstream 384835 44761615 ~ 44762033 (-) True G404649
TU459431 other upstream 621456 44998236 ~ 44998709 (-) True G404935
TU459827 other upstream 814752 45191532 ~ 45192467 (-) True G405292
TU460438 other upstream 1208868 45585648 ~ 45586183 (-) False G405871

Expression Profile