RNA id: TU459119


Basic Information

Item Value
RNA id TU459119
length 1552
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G404653
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 44766378 ~ 44768005 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATATCATCATAATAGCTATTATGTACATTTAACATTcacataaaaaatacaaaactatATATTTATGACTGAATCTCTATTCAACATAATATAACAAAGTAGACCAGGGTTTATTCATCGATGTTTATCCCCACTGTAAATTTAGCAGCTGTTATCTTCTGAAAACAGATTTCTGTTTTGGACAAACAGGTAGTAAATTTACCGCAGCAGTTAAGTCATATGAATATCCCCCAAAAGTGTGAGGAAAAACAACATGCTTAAGTGTGATATATTGTATGTGACGAAGATTGTGTGGTAAGTTGCATTTTCTTGGCTCAGAGGGAGTGAGGTCATTCAGTGATTGACCGCACTGAAAAACATTGGCAAATCAAAGTGTGCAAGAGTATCAAATGGCACGTTATGAAATATGAAAAAGAAAAATAGTGTCAACTcaaaaatgaaatgaaatccTACTCCGATGTTGTATAAAACAGAATACATACATTGTTTCAGTCACAGTATTCTCCATCCTCTTCCCCATAATGCACAAAAGCTATAACATTTCTGATGGGAAAGAGACTATTTGACTAAAAGTATTGGTATGCACTGGACTGGGACTAGGACGGGGTAACTTTTGTTCAACAAAAACTAGACAAAGCCATTTTCGTCAGCTTTGAGTTGTAAAAACAAAACCAGGGCCTTTCTCTCACAAGGGTATTATACATCAGTGAGCAAAAAGGTTCTCAATAAAATAAACTGGAACACACACAACTAGCTAGCCAACATTTCACAATGGAGGGACACGGTAAGATGGGGAAAAAAATCAAAATCTTTGCCCGACGACAAGCGGATGTGTACAGCTCAGATAAGAGAATTGCGTTACAGGAGTTTACATGAGAAGAACATCAACGTGGGTAGCATTGCacctcaaataaataatacacTTTCTCTTTGGATAAAATGCGAGAGACAAAAGGGTATACACAGTAAGACAGACTGACACTGTAAatgtataaataataataaacaaaatatataaatacatacaagTAAACCAACGCACAGACGTTTCGAAATATACGATTGCTTagttcctcttctcttcctataggtccggtttcccaaaagcatctgaAGGCTAAGTTCGTGGTTAGAACCATAGGTTCTTAGCCTTAAGATGCATCTGGGGAAACTGGGCTCAGCACAATAAATAATCATACACTTTAtgtacagtatgaacagtatTCTGTGGCTGAACTGAAACACTGTTCAGCTATTATGAATGTTTATCATCCGGTCTGTGTTGGAGGACGTATTGATGTAGGAAATTCCTAGTGTTCCTGctctttttcctcctcttctttgtcctcctcttcctcaaagTTCTGTGTCTGATGATGACTAAATGGAAGAACAAAACGGTTCACTTGCTGTTGCATCAGTGAACATGACAACGGCACAGAATCTCACTGCAACATTTAGCTTCTTTTCCTTGACTTGACTCACTGGCGGTCTTCTCCTCCCGCATGGGACATGAAGCAAGGTGATTCTGGTTATCATAGAAGCTGGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459123 lncRNA downstream 925 44765212 ~ 44765529 (-) False G404654
TU459122 lncRNA downstream 989 44765063 ~ 44765465 (-) False G404654
TU459124 lncRNA downstream 989 44765212 ~ 44765465 (-) True G404654
TU459118 lncRNA downstream 1670 44764370 ~ 44764784 (-) True G404652
TU459117 lncRNA downstream 2932 44763245 ~ 44763522 (-) True G404651
TU459270 lncRNA upstream 11771 44779776 ~ 44852641 (-) True arl15b
TU459278 lncRNA upstream 16662 44784667 ~ 44785229 (-) True G404797
TU459315 lncRNA upstream 95418 44863423 ~ 44863635 (-) True G404829
TU459317 lncRNA upstream 98363 44866368 ~ 44866579 (-) True G404831
TU459319 lncRNA upstream 100627 44868632 ~ 44869265 (-) True G404833
XM_021603070.2 mRNA downstream 8188 44752915 ~ 44758266 (-) True LOC110523920
XM_036977637.1 mRNA downstream 8470 44752915 ~ 44757984 (-) True LOC118936294
XR_005051745.1 mRNA downstream 80915 44682942 ~ 44685539 (-) False LOC118964612
XM_021603067.2 mRNA downstream 143138 44610017 ~ 44623316 (-) True LOC110523917
XR_005051744.1 mRNA downstream 143207 44610017 ~ 44623247 (-) False LOC110523917
XM_036977639.1 mRNA upstream 11763 44779768 ~ 44840743 (-) False arl15b
XM_021603076.2 mRNA upstream 11763 44779768 ~ 44852796 (-) False arl15b
XM_021603075.2 mRNA upstream 11763 44779768 ~ 44853071 (-) False arl15b
XM_021603077.2 mRNA upstream 147179 44915184 ~ 44918008 (-) False LOC110523925
XM_036977641.1 mRNA upstream 147179 44915184 ~ 44918760 (-) False LOC110523925
TU459112 other downstream 4421 44761615 ~ 44762033 (-) True G404649
TU458967 other downstream 126409 44639801 ~ 44640045 (-) True G404520
TU458800 other downstream 392580 44373498 ~ 44373874 (-) True G404357
TU457498 other downstream 1218180 43544687 ~ 43548274 (-) True G403104
TU455590 other downstream 2730813 42033926 ~ 42035641 (-) True plac8.2
TU459431 other upstream 230231 44998236 ~ 44998709 (-) True G404935
TU459827 other upstream 423527 45191532 ~ 45192467 (-) True G405292
TU460438 other upstream 817643 45585648 ~ 45586183 (-) False G405871
TU460459 other upstream 844423 45612428 ~ 45612955 (-) True G405889
TU460686 other upstream 1214833 45982838 ~ 45989483 (-) False G406076

Expression Profile