Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00031535 |
| length | 1222 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 3 |
| gene id | XLOC_015889 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007113.7 |
| NCBI id | CM002886.2 |
| chromosome length | 59640629 |
| location | 48073972 ~ 48082182 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070912-633 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in midbrain. Human ortholog(s) of this gene implicated in prostate cancer. Orthologous to human KLF6 (Kruppel like factor 6). |
| ensembl_id | ENSDART00000186442 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00033681 | lncRNA | upstream | 75552 | 47980867 ~ 47998420 (+) | True | XLOC_015888 |
| TCONS_00033680 | lncRNA | upstream | 97266 | 47973613 ~ 47976706 (+) | True | XLOC_015887 |
| TCONS_00033679 | lncRNA | upstream | 130480 | 47937952 ~ 47943492 (+) | False | XLOC_015885 |
| TCONS_00033678 | lncRNA | upstream | 157000 | 47841571 ~ 47916972 (+) | True | XLOC_015882 |
| TCONS_00031512 | lncRNA | upstream | 749593 | 47312577 ~ 47324379 (+) | True | XLOC_015877 |
| TCONS_00031538 | lncRNA | downstream | 8102 | 48089066 ~ 48095880 (+) | True | XLOC_015890 |
| TCONS_00033682 | lncRNA | downstream | 182066 | 48263030 ~ 48264841 (+) | False | XLOC_015891 |
| TCONS_00033683 | lncRNA | downstream | 194634 | 48275598 ~ 48276079 (+) | True | XLOC_015892 |
| TCONS_00033311 | lncRNA | downstream | 216088 | 48297052 ~ 48297450 (+) | True | XLOC_015895 |
| TCONS_00031543 | lncRNA | downstream | 222230 | 48303194 ~ 48304333 (+) | False | XLOC_015894 |
| TCONS_00031534 | mRNA | upstream | 122405 | 47945359 ~ 47951567 (+) | True | XLOC_015886 |
| TCONS_00031533 | mRNA | upstream | 128097 | 47944967 ~ 47945875 (+) | False | XLOC_015886 |
| TCONS_00031531 | mRNA | upstream | 135561 | 47935476 ~ 47938411 (+) | False | XLOC_015885 |
| TCONS_00031530 | mRNA | upstream | 144689 | 47927026 ~ 47929283 (+) | True | XLOC_015884 |
| TCONS_00031528 | mRNA | upstream | 162225 | 47905735 ~ 47911747 (+) | False | XLOC_015883 |
| TCONS_00031537 | mRNA | downstream | 8093 | 48089057 ~ 48119409 (+) | False | XLOC_015890 |
| TCONS_00031540 | mRNA | downstream | 201626 | 48282590 ~ 48284160 (+) | True | XLOC_015893 |
| TCONS_00031541 | mRNA | downstream | 207497 | 48288461 ~ 48304020 (+) | False | XLOC_015894 |
| TCONS_00031542 | mRNA | downstream | 222178 | 48303142 ~ 48304696 (+) | False | XLOC_015894 |
| TCONS_00031545 | mRNA | downstream | 539191 | 48620155 ~ 48627261 (+) | True | XLOC_015897 |
| TCONS_00031532 | other | upstream | 130480 | 47942191 ~ 47943492 (+) | True | XLOC_015885 |
| TCONS_00031510 | other | upstream | 924403 | 47148933 ~ 47149569 (+) | True | XLOC_015874 |
| TCONS_00031509 | other | upstream | 960318 | 47112696 ~ 47113654 (+) | True | XLOC_015873 |
| TCONS_00031505 | other | upstream | 1784976 | 46288860 ~ 46288996 (+) | True | XLOC_015865 |
| TCONS_00031495 | other | upstream | 2508161 | 45565213 ~ 45565811 (+) | True | XLOC_015853 |
| TCONS_00031539 | other | downstream | 182786 | 48263750 ~ 48264602 (+) | True | XLOC_015891 |
| TCONS_00031564 | other | downstream | 1565994 | 49646958 ~ 49647989 (+) | True | XLOC_015908 |
| TCONS_00031572 | other | downstream | 1774782 | 49855746 ~ 49856793 (+) | True | XLOC_015912 |
| TCONS_00031579 | other | downstream | 2121674 | 50202638 ~ 50203295 (+) | True | XLOC_015915 |
| TCONS_00031582 | other | downstream | 2509368 | 50590332 ~ 50590448 (+) | True | XLOC_015919 |
