RNA id: TU460679


Basic Information

Item Value
RNA id TU460679
length 367
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G406072
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 45930040 ~ 45931456 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTAGATCACCGTATACAGTCATATCGTGGGAGCCGCTCACTGTACCAGACCTGCGCATAACGGTAGTTctagtctgtccataataaacccaggccTCCACCAGAGCGCAGCACTGGTACTGTTCGGATGCTCGGATATGGACCGAGgtgaaaatcatcactccccaatcagtcaacaatcaacccatcaatcagaagacacacctcctcctgtttcctacccaatcacagttcctttcccttggtttaaaaaccccatcagttgtttgctctagagctcaatctctctgtgtaaaatgccatgtatgtagatctctgtgtttcactctctctttgtgtcttaaacctctcttttgtttgagcacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460659 lncRNA downstream 12396 45917426 ~ 45917644 (-) True G406062
TU460654 lncRNA downstream 18250 45911191 ~ 45911790 (-) True G406057
TU460643 lncRNA downstream 32072 45897684 ~ 45897968 (-) True G406049
TU460569 lncRNA downstream 164915 45764403 ~ 45765125 (-) True G405987
TU460515 lncRNA downstream 174587 45695478 ~ 45755453 (-) True G405942
TU460687 lncRNA upstream 45926 45977280 ~ 45989439 (-) False G406076
TU460695 lncRNA upstream 46078 45977432 ~ 45982222 (-) False G406077
TU460697 lncRNA upstream 46078 45977432 ~ 45978066 (-) False G406077
TU460698 lncRNA upstream 46078 45977432 ~ 45982222 (-) True G406077
TU460685 lncRNA upstream 51484 45982838 ~ 45989439 (-) False G406076
XM_021603091.2 mRNA downstream 457989 45342639 ~ 45472051 (-) False LOC110523936
XM_021603093.2 mRNA downstream 457989 45342639 ~ 45472051 (-) False LOC110523936
XM_021603094.2 mRNA downstream 457989 45342639 ~ 45472051 (-) False LOC110523936
XM_036977667.1 mRNA downstream 534147 45342639 ~ 45395893 (-) False LOC110523936
XM_036977668.1 mRNA downstream 534148 45355303 ~ 45395892 (-) False LOC110523936
XM_021603113.2 mRNA upstream 88344 46019698 ~ 46023577 (-) False LOC110523950
XM_021603116.2 mRNA upstream 204058 46135412 ~ 46171502 (-) False LOC110523952
XM_021603117.2 mRNA upstream 204058 46135412 ~ 46171517 (-) True LOC110523952
XM_021603122.2 mRNA upstream 370458 46301812 ~ 46322518 (-) False LOC110523954
XM_021603123.2 mRNA upstream 374983 46306337 ~ 46322509 (-) True LOC110523954
TU460459 other downstream 317085 45612428 ~ 45612955 (-) True G405889
TU460438 other downstream 343857 45585648 ~ 45586183 (-) False G405871
TU459827 other downstream 737573 45191532 ~ 45192467 (-) True G405292
TU459431 other downstream 931331 44998236 ~ 44998709 (-) True G404935
TU459112 other downstream 1168007 44761615 ~ 44762033 (-) True G404649
TU460686 other upstream 51484 45982838 ~ 45989483 (-) False G406076
TU460699 other upstream 89800 46021154 ~ 46023840 (-) True LOC110523950
TU461254 other upstream 288313 46219667 ~ 46234537 (-) True G406588
TU461500 other upstream 672875 46604229 ~ 46610115 (-) True LOC110523962
TU463578 other upstream 2290598 48221952 ~ 48223220 (-) True G408664

Expression Profile