RNA id: TU460686


Basic Information

Item Value
RNA id TU460686
length 1335
RNA type TUCP
GC content 0.52
exon number 10
gene id G406076
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 45977280 ~ 45989483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attgatgtaaaaaaaaaagacaaagcTCACAAAGACATGAATCCAAGCAGCTTAATCCATCATTTTATTGTGCTGTGTTCTATTCTGCATTGAATGATGTAGGTATTCTGTCAGACGACTAACCCAGACGGTGATCTGTGCTATGTATTCTTCCTTATGACCTCTAATCTCCTTCAGTTAGCTTTCAGGAACTCAGTTTCCATCCTTCATCACCCCACAGTACTCGTCACACTCCCCCTTGGAGTAGAACTTGTTACTGTTGCCCTGGCAGTAGTCCTTTTTATATTCCAGACAGAGTCCAGAGTTGGGATCGAAGGCCCAGATCTTGGGCTGCCCAGTGCAGGGTTGAGCATCCATGGGCATTCTGCAGCCTCAGTGCGGCAACTCTGCAGACACTCCCTCTCAGTTACAAAGTTGTTCTGGTTGCCCATACAGCCTCCGTAGGTGAACAGCTGACAGCCCATACTGGTGGAGTTGTAGAAGTAGCGCTGCACCATCCCGAAACAGGGACCTGCGTCTGGCTCCGCCTTACAGGACTCTGCACTCCGGAAGATCATGGTGTCATCACCCATACCGGAGCCCTCCACAGGGGCAGGATCAGGGAGGACTATGTTCCTCTTAGCTCTCGGTGCCGTAATCTCAGATGGAGACTCTGCTGCTACAGGCTCTGCTCCTGGTACACACTCGCctttgtTCTGTTTGATGATGACTGTGTCGTCAGCCATGCCCTGctccctcaccagcctcctgaaGTCGTCCAAGATAGTGGTCCGCAGTTCCATGGTGCGGCTGTATAGCTTGGCAGACTTGGTCTTCTCGCCACCTGTCTTCTGTTTACTCATCATGACGATGGCATACTCATCATAGTTAGTGTGAACAACATAGGCATCAACATCAGCCCCCCACTCTGCATGGAGGAGaTGGCAACGTGGTAGGTGAATCTTCCAGGTGTGTCTGTTAGCTCATAATCACCGGAGATCTGCTTACATGTCCCGtgTTTTTCATGCTGCGTTTCATGCTGACTTTGCCTTCAGTGTCCCCGGCCTGCAGCTCCAGTATGCCGATAGCTGAGTCTCCTCTGTGGCGCTGCATCCAGGGACAGGTGGAAGCTACCGCAATATCATGCCACTTCCCCATGAACTTGCTCAGGTCAAAGTTCTCCTGTGTGGGGAAGAGCGGTTCGGCAAGCACTGGCACACCATGGAGGGAGTTCACCAGGACCAAAAGGACCACAAGTATGGCACCCTGCTgcattctgtctgtgtgtctccgaTACGAACCTCCGACTGAGTTTCCTCTGAGCCCCTGGATCTGCTGGGAGATCACACCCACCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460695 lncRNA downstream 616 45977432 ~ 45982222 (-) False G406077
TU460698 lncRNA downstream 616 45977432 ~ 45982222 (-) True G406077
TU460697 lncRNA downstream 4772 45977432 ~ 45978066 (-) False G406077
TU460681 lncRNA downstream 51382 45930154 ~ 45931456 (-) True G406072
TU460679 lncRNA downstream 51484 45930040 ~ 45931354 (-) False G406072
TU460777 lncRNA upstream 78321 46067804 ~ 46068042 (-) True G406155
TU461174 lncRNA upstream 89659 46079142 ~ 46096671 (-) True G406515
TU461229 lncRNA upstream 182326 46171809 ~ 46172156 (-) True G406566
TU461237 lncRNA upstream 207904 46197387 ~ 46202512 (-) True G406574
TU461325 lncRNA upstream 346317 46335800 ~ 46338550 (-) True G406654
XM_021603091.2 mRNA downstream 510787 45342639 ~ 45472051 (-) False LOC110523936
XM_021603093.2 mRNA downstream 510787 45342639 ~ 45472051 (-) False LOC110523936
XM_021603094.2 mRNA downstream 510787 45342639 ~ 45472051 (-) False LOC110523936
XM_036977667.1 mRNA downstream 586945 45342639 ~ 45395893 (-) False LOC110523936
XM_036977668.1 mRNA downstream 586946 45355303 ~ 45395892 (-) False LOC110523936
XM_021603113.2 mRNA upstream 30215 46019698 ~ 46023577 (-) False LOC110523950
XM_021603116.2 mRNA upstream 145929 46135412 ~ 46171502 (-) False LOC110523952
XM_021603117.2 mRNA upstream 145929 46135412 ~ 46171517 (-) True LOC110523952
XM_021603122.2 mRNA upstream 312329 46301812 ~ 46322518 (-) False LOC110523954
XM_021603123.2 mRNA upstream 316854 46306337 ~ 46322509 (-) True LOC110523954
TU460459 other downstream 369883 45612428 ~ 45612955 (-) True G405889
TU460438 other downstream 396655 45585648 ~ 45586183 (-) False G405871
TU459827 other downstream 790371 45191532 ~ 45192467 (-) True G405292
TU459431 other downstream 984129 44998236 ~ 44998709 (-) True G404935
TU459112 other downstream 1220805 44761615 ~ 44762033 (-) True G404649
TU460699 other upstream 31671 46021154 ~ 46023840 (-) True LOC110523950
TU461254 other upstream 230184 46219667 ~ 46234537 (-) True G406588
TU461500 other upstream 614746 46604229 ~ 46610115 (-) True LOC110523962
TU463578 other upstream 2232469 48221952 ~ 48223220 (-) True G408664
TU463710 other upstream 2363819 48353302 ~ 48357240 (-) False G408782

Expression Profile