RNA id: TU460695


Basic Information

Item Value
RNA id TU460695
length 1147
lncRNA type antisense_over
GC content 0.48
exon number 6
gene id G406077
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 45977432 ~ 45982222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGACACTAGCATTTATTCAGCCATAGCGGTGTTATACAAGACAATGATGTCCCTTGTTTATCGGATTCAGAAAGGAAAACAAATTTAACTGTCCGTTGTACCGAGGggacaagagacagacagacatcagagAGGATGTTGGGAATAAAATAAGACGGGCTGTCTAAGAGTGCATCTGTCATTAGTGGTTATACTATTTCACCCTTGTGAGGTAAAGCGTGTTGAGGTTCGGTTGTTGCCCAGTGAAACGTGTGGTGTAAAGGTGAAACCCATCCTGATGCTGTGCTCCGATGGAGAGACAAATGTCTAATAGGTGCCGGGAAACTGGTGCGGCGAAGCAAATCAACGAGTAATCATGATGTTGCTCTGATCTGAAGGAGAGCACAAAAACAAAACCTGCAGTTTATTCAAAAATCAAGTGTTCCGGTAGTCAGTCGACCACAACATAGACTGTCTGTAGAAAGGATTTCCAGTGACTCACCTTAGCGTCCAGAGGGAGGACAGTTCTCTGCAAAttAGGCTACTACCTGCAGGTGGTGGGGTCAGAATGGCGTCCTTGGGAAATCCATGAGATGTGGCAAAGTCTTTAAATTTCTGAATCACTTCAGGCTTTACCTTCTGAGAACGACCATAGAGGGCCACCTGTGTGTACTCTCTGTCCATCTTCTTGTGCTTCAGGACCAGTGCATATTCATTATAGTTGGTCTCCACTACTGTGATGTCCTTTACTTTGTTATGGCGGGTGCTGAAATAGGTGAAGGCGCCAGGTATCGCTGTCTTCTCGTACGTGTAAAGCTTACTGCGGCAACCTGTTGATCTCTGGGTCCACATGGTGAGGTTGACGTCGCCGTTGGTCTGTGGATTCAAGATGCCCATGGACACTCTCAGCTTGTCTCTGTATGAGGCAGTAAACCCTGGGGAGTCATACGCCAGGCCCACACGGTACCACTTCCCTGCAAACTCTGCAGGTCGAAGTCTCTCTGAGGCTGCACGTCTCCATGGACACCCATCAAACACACCATCGCCGTGGCCATTGTCACAAAGGTGATCCTCATGGTTGGTtgcagaggaagagaaggaaagagagagaggaggagagaaagacaagTACCCTGTTCTGCAACCAAACTGAACTGTAAAAGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460681 lncRNA downstream 45976 45930154 ~ 45931456 (-) True G406072
TU460679 lncRNA downstream 46078 45930040 ~ 45931354 (-) False G406072
TU460677 lncRNA downstream 46078 45930154 ~ 45931354 (-) False G406072
TU460659 lncRNA downstream 59788 45917426 ~ 45917644 (-) True G406062
TU460654 lncRNA downstream 65642 45911191 ~ 45911790 (-) True G406057
TU460685 lncRNA upstream 616 45982838 ~ 45989439 (-) False G406076
TU460688 lncRNA upstream 616 45982838 ~ 45989483 (-) False G406076
TU460689 lncRNA upstream 616 45982838 ~ 45989439 (-) False G406076
TU460690 lncRNA upstream 616 45982838 ~ 45989439 (-) False G406076
TU460691 lncRNA upstream 616 45982838 ~ 45989439 (-) False G406076
XM_021603091.2 mRNA downstream 505381 45342639 ~ 45472051 (-) False LOC110523936
XM_021603093.2 mRNA downstream 505381 45342639 ~ 45472051 (-) False LOC110523936
XM_021603094.2 mRNA downstream 505381 45342639 ~ 45472051 (-) False LOC110523936
XM_036977667.1 mRNA downstream 581539 45342639 ~ 45395893 (-) False LOC110523936
XM_036977668.1 mRNA downstream 581540 45355303 ~ 45395892 (-) False LOC110523936
XM_021603113.2 mRNA upstream 37476 46019698 ~ 46023577 (-) False LOC110523950
XM_021603116.2 mRNA upstream 153190 46135412 ~ 46171502 (-) False LOC110523952
XM_021603117.2 mRNA upstream 153190 46135412 ~ 46171517 (-) True LOC110523952
XM_021603122.2 mRNA upstream 319590 46301812 ~ 46322518 (-) False LOC110523954
XM_021603123.2 mRNA upstream 324115 46306337 ~ 46322509 (-) True LOC110523954
TU460459 other downstream 364477 45612428 ~ 45612955 (-) True G405889
TU460438 other downstream 391249 45585648 ~ 45586183 (-) False G405871
TU459827 other downstream 784965 45191532 ~ 45192467 (-) True G405292
TU459431 other downstream 978723 44998236 ~ 44998709 (-) True G404935
TU459112 other downstream 1215399 44761615 ~ 44762033 (-) True G404649
TU460686 other upstream 616 45982838 ~ 45989483 (-) False G406076
TU460699 other upstream 38932 46021154 ~ 46023840 (-) True LOC110523950
TU461254 other upstream 237445 46219667 ~ 46234537 (-) True G406588
TU461500 other upstream 622007 46604229 ~ 46610115 (-) True LOC110523962
TU463578 other upstream 2239730 48221952 ~ 48223220 (-) True G408664

Expression Profile