RNA id: TU461254


Basic Information

Item Value
RNA id TU461254
length 417
RNA type TUCP
GC content 0.52
exon number 2
gene id G406588
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 46219667 ~ 46234537 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaactgaattggtccacaaagacagcgtggtgaagaaggcgcaacagcgcctcttcaacctcaggaggctgaagaaatttggcttgtcaccaaaaacactcacaaacttttacagatgcacaatcgaaagcatcctgtcgggctgtataaccgcctggtacggcaactgctccacccacaaccgcaaggctctccagagggtagtgaggtctgcacaacgcatcaccgagggCAAATTACCTGcattccaggacacctacacggacaacaaccacccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagctgggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccatcactaacattagaggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU461237 lncRNA downstream 17155 46197387 ~ 46202512 (-) True G406574
TU461229 lncRNA downstream 47511 46171809 ~ 46172156 (-) True G406566
TU461174 lncRNA downstream 122996 46079142 ~ 46096671 (-) True G406515
TU460777 lncRNA downstream 151625 46067804 ~ 46068042 (-) True G406155
TU460688 lncRNA downstream 230184 45982838 ~ 45989483 (-) False G406076
TU461325 lncRNA upstream 101263 46335800 ~ 46338550 (-) True G406654
TU461482 lncRNA upstream 309542 46544079 ~ 46544458 (-) True G406774
TU461484 lncRNA upstream 314611 46549148 ~ 46561361 (-) True oaz1b
TU461491 lncRNA upstream 328499 46563036 ~ 46563305 (-) True G406782
TU461492 lncRNA upstream 328926 46563463 ~ 46563698 (-) True G406783
XM_021603117.2 mRNA downstream 48150 46135412 ~ 46171517 (-) True LOC110523952
XM_021603116.2 mRNA downstream 48165 46135412 ~ 46171502 (-) False LOC110523952
XM_021603113.2 mRNA downstream 196090 46019698 ~ 46023577 (-) False LOC110523950
XM_021603091.2 mRNA downstream 747616 45342639 ~ 45472051 (-) False LOC110523936
XM_021603093.2 mRNA downstream 747616 45342639 ~ 45472051 (-) False LOC110523936
XM_021603122.2 mRNA upstream 67275 46301812 ~ 46322518 (-) False LOC110523954
XM_021603123.2 mRNA upstream 71800 46306337 ~ 46322509 (-) True LOC110523954
XM_036977688.1 mRNA upstream 176419 46410956 ~ 46450430 (-) True LOC110523958
XM_021603134.2 mRNA upstream 233498 46468035 ~ 46480495 (-) False LOC110523959
XM_021603136.2 mRNA upstream 233498 46468035 ~ 46480495 (-) False LOC110523959
TU460699 other downstream 195827 46021154 ~ 46023840 (-) True LOC110523950
TU460686 other downstream 230184 45982838 ~ 45989483 (-) False G406076
TU460459 other downstream 606712 45612428 ~ 45612955 (-) True G405889
TU460438 other downstream 633484 45585648 ~ 45586183 (-) False G405871
TU459827 other downstream 1027200 45191532 ~ 45192467 (-) True G405292
TU461500 other upstream 369692 46604229 ~ 46610115 (-) True LOC110523962
TU463578 other upstream 1987415 48221952 ~ 48223220 (-) True G408664
TU463710 other upstream 2118765 48353302 ~ 48357240 (-) False G408782
TU463712 other upstream 2119111 48353648 ~ 48357240 (-) False G408782
TU463709 other upstream 2119174 48353711 ~ 48357240 (-) False G408782

Expression Profile