RNA id: TCONS_00031539


Basic Information

Item Value
RNA id TCONS_00031539
length 853
RNA type processed_pseudogene
GC content 0.47
exon number 1
gene id XLOC_015891
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 48263030 ~ 48264841 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGACGAACTGCTCAACTGAAGGTGTGGATACTTTAACAAAGAAGCTGGATTTGGTGATTTACGTGCCCATCCTGGTGTTCGGCTTGGCGTTAAACATTATGGCGTTGGTGGTGTTCTGCAGGCTGCTCCGAAAATGGACAGAGTCTTCAATCTACATGACTAATCTGGCACTGATggacctgctgctgctgcttcagtTGCCCTTCAAAATGCACGCCGCGCACCACGAGTGGGCAGAGGACAAGAAGCTGCTCTGCTCCTTCCTGGAAAGTCTTTATTTTGTGGCTATGTATGGTAGTATCTACACAATTGCATGCATAGCCCTAGACCGATACTTCGCAATAAACCACCCGTTTCGTGCCAAGCAGTTGCGCTCGAAAAGAAACGCCTTGATTATTTGTGTGTTCATCTGGCTGTTTGTGATGGGAGCCACTTCACCGATTTACACCTTCCGCAGAGAAAAGACTGGTAATTTTACATGTTTTCATGGTTTTTCGGATAAAGGTTGGAGCACTGCACTAATTGTGTGCCTGGAGGTCTTTGGTTTCCTGTTGCCTGCCGCGGTACTGGTGGTGTGTTCGATTCAGAGCATCCGTACACTCAAAGCTACAAAAAACAGCAACCGTAAGAAGCAAGCTGGTGTGAGAATCATCTACAGCAGCCTCGCTGCCTTCCTAGTGCCCTTCACTCCTTGTCACATTGCCATATTCCTCCAGTATCTAGTCCGAAATGACCACATTTTAGACTGCAAAAAGAAGCAGGACATCGCTCTCTTCATACAGGTCTCTATCAACATCGCAAATGTGACCTGCTGCTTGGACGCACTGTGTTACTATTTCATCGCCAAGGAAGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000149516

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031538 lncRNA upstream 167870 48089066 ~ 48095880 (+) True XLOC_015890
TCONS_00033681 lncRNA upstream 265330 47980867 ~ 47998420 (+) True XLOC_015888
TCONS_00033680 lncRNA upstream 287044 47973613 ~ 47976706 (+) True XLOC_015887
TCONS_00033679 lncRNA upstream 320258 47937952 ~ 47943492 (+) False XLOC_015885
TCONS_00033678 lncRNA upstream 346778 47841571 ~ 47916972 (+) True XLOC_015882
TCONS_00033683 lncRNA downstream 10996 48275598 ~ 48276079 (+) True XLOC_015892
TCONS_00033311 lncRNA downstream 32450 48297052 ~ 48297450 (+) True XLOC_015895
TCONS_00031543 lncRNA downstream 38592 48303194 ~ 48304333 (+) False XLOC_015894
TCONS_00031544 lncRNA downstream 38823 48303425 ~ 48304333 (+) True XLOC_015894
TCONS_00033312 lncRNA downstream 116308 48380910 ~ 48387392 (+) True XLOC_015896
TCONS_00031537 mRNA upstream 144341 48089057 ~ 48119409 (+) False XLOC_015890
TCONS_00031536 mRNA upstream 181568 48074243 ~ 48082182 (+) True XLOC_015889
TCONS_00031535 mRNA upstream 182786 48073972 ~ 48080964 (+) False XLOC_015889
TCONS_00031534 mRNA upstream 312183 47945359 ~ 47951567 (+) True XLOC_015886
TCONS_00031533 mRNA upstream 317875 47944967 ~ 47945875 (+) False XLOC_015886
TCONS_00031540 mRNA downstream 17988 48282590 ~ 48284160 (+) True XLOC_015893
TCONS_00031541 mRNA downstream 23859 48288461 ~ 48304020 (+) False XLOC_015894
TCONS_00031542 mRNA downstream 38540 48303142 ~ 48304696 (+) False XLOC_015894
TCONS_00031545 mRNA downstream 355553 48620155 ~ 48627261 (+) True XLOC_015897
TCONS_00031546 mRNA downstream 374225 48638827 ~ 48653207 (+) True XLOC_015898
TCONS_00031532 other upstream 320258 47942191 ~ 47943492 (+) True XLOC_015885
TCONS_00031510 other upstream 1114181 47148933 ~ 47149569 (+) True XLOC_015874
TCONS_00031509 other upstream 1150096 47112696 ~ 47113654 (+) True XLOC_015873
TCONS_00031505 other upstream 1974754 46288860 ~ 46288996 (+) True XLOC_015865
TCONS_00031495 other upstream 2697939 45565213 ~ 45565811 (+) True XLOC_015853
TCONS_00031564 other downstream 1382356 49646958 ~ 49647989 (+) True XLOC_015908
TCONS_00031572 other downstream 1591144 49855746 ~ 49856793 (+) True XLOC_015912
TCONS_00031579 other downstream 1938036 50202638 ~ 50203295 (+) True XLOC_015915
TCONS_00031582 other downstream 2325730 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031589 other downstream 2597925 50862527 ~ 50891944 (+) False XLOC_015923

Expression Profile

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