RNA id: TU463578


Basic Information

Item Value
RNA id TU463578
length 1269
RNA type TUCP
GC content 0.46
exon number 1
gene id G408664
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48221952 ~ 48223220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcaatctacacactaacccataatgacaaagcgaaaacaggtcgacatttttgcaaatgtattacaaataaaaaatataccttatttacataagtattcagaccctttgctatgagactcaaattgagctccggtgcatcctgtttccattgatcatccttgatgtttctacaacttggatttagaaaaggaacacacctgtctatataaggtcccacagttgaacgTGCATGTCAattcaaaaaccaagccatgaggttgaaggaattgactgtagagctccgagacaggattgtgtagaggtacagatctggagaagggtgccagaaaatgtctgcagcattgaaggttcccaagaacacagtggcctccatcattcttaaatggaaaaagtttggaactgCCAAGATTCttgctagagctggccgctcagccaaactgagcaatcgggggagaagggccttggtcagggaggtgaccaagaacccgatggccactctgacagtgCTTCAGAGATCCTCTTGCGGAGATggaaaaaccttccagaaggacaaccatctctgtagcactctaccaaatcaggcctttatggtagagtggccagacagagtccactcctcagtaaaaggcacatgaaggcCCACTTGCAGTTTACCAAAAGGCAATTAAAGACTcccagacaatgagaaacaagattctctggtctgatgaaaccaagattgaactctttggactgaatgccaagcatcacatctggaggaaacctggcaccagtgaagcatggtggcagcagcagcatcatgctgtggggatgtttttcagcgacaagggactgggacactagtcaggattgaggaaaagatgtatagagagatccttgatgaaaacctgctccagagcactcagggacttcagactgaggtgaaggttcaccttccaacaggacaacgaccctaagccaacagccaagacaatgcaggagtggctttgggacaagtctctgagtgtccttgagtggcccagccagagctggttcttgaacccaatcaaatatctctggagagacctgaaaatagctgtgcagcgacactccccatccaacctgacagagcttgagaggatctgcagagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagcatcctaCCCAAGACTCgaggctttaatcgctgccaaaggtgcttcaacaaagtactgaaaaAGGGTgtgcatacttatgtaaatgtgattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463581 lncRNA downstream 1460 48220274 ~ 48220492 (-) True G408666
TU463577 lncRNA downstream 3493 48218126 ~ 48218459 (-) True G408663
TU463576 lncRNA downstream 3887 48217472 ~ 48218065 (-) True G408662
TU463536 lncRNA downstream 57579 48163590 ~ 48164373 (-) True G408623
TU463467 lncRNA downstream 75941 48063783 ~ 48146011 (-) True G408564
TU463579 lncRNA upstream 80 48223300 ~ 48226856 (-) True G408665
TU463585 lncRNA upstream 6945 48230165 ~ 48255834 (-) True G408669
TU463582 lncRNA upstream 33072 48256292 ~ 48279779 (-) True G408667
TU463596 lncRNA upstream 124980 48348200 ~ 48349152 (-) True G408678
TU463717 lncRNA upstream 137197 48360417 ~ 48360742 (-) True G408787
XM_021603201.2 mRNA downstream 96274 48106327 ~ 48125678 (-) True nup54
XM_021603199.2 mRNA downstream 96275 48106327 ~ 48125677 (-) False nup54
XM_021603202.2 mRNA downstream 96275 48106327 ~ 48125677 (-) False nup54
XM_021603203.2 mRNA downstream 96275 48106327 ~ 48125677 (-) False nup54
XM_036977729.1 mRNA downstream 96275 48106327 ~ 48125677 (-) False nup54
XM_021603215.2 mRNA upstream 201645 48424865 ~ 48447883 (-) False LOC110523983
XM_021603214.2 mRNA upstream 201645 48424865 ~ 48447888 (-) False LOC110523983
XM_021603219.2 mRNA upstream 316862 48540082 ~ 48544179 (-) False pdcl
XM_021603220.2 mRNA upstream 316862 48540082 ~ 48544179 (-) False pdcl
XM_021603221.2 mRNA upstream 316862 48540082 ~ 48544432 (-) False pdcl
TU461500 other downstream 1611837 46604229 ~ 46610115 (-) True LOC110523962
TU461254 other downstream 1987415 46219667 ~ 46234537 (-) True G406588
TU460699 other downstream 2198112 46021154 ~ 46023840 (-) True LOC110523950
TU460686 other downstream 2232469 45982838 ~ 45989483 (-) False G406076
TU460459 other downstream 2608997 45612428 ~ 45612955 (-) True G405889
TU463710 other upstream 130082 48353302 ~ 48357240 (-) False G408782
TU463712 other upstream 130428 48353648 ~ 48357240 (-) False G408782
TU463709 other upstream 130491 48353711 ~ 48357240 (-) False G408782
TU463711 other upstream 130491 48353711 ~ 48357565 (-) True G408782
TU465237 other upstream 1310696 49533916 ~ 49576456 (-) True G410168

Expression Profile