RNA id: TU463579


Basic Information

Item Value
RNA id TU463579
length 1717
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id G408665
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48223300 ~ 48226856 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTATTGCCTCAAACATTTTACACTGCAGAGTTCTGGTCGAGATGGCAGAAATGTACCGTTAAACTGGTCCAACATTTTTAACAATTCATCTTCATCTACAGTGGCCAAGCTACAAAGCAGCCTCTTTGGAAAAAAGTAACTTGGAAGAAAATAACCTAAATTAATTGCCAATCAGTCTTTATACGCCTCTGTACATTGCATCTCAAACTATTTACATATTTTCACCAGGCAAAAAAAGTTGAattacaaaacatttctgcacaaTTTCCCAGTAAAAGACCAAGGCGATGATGTTCCTTTTAGTGTGATATCACATATTGACAATAATTAAAAAAATTCTAACAGAATACCTACAAATTAAGCACAAAGAATAAAAGGTTTAAATGAAGCATGTGTACTCTATTCATAGTTTTCATATTTTTTGATAAAATAAACATAACACATTGTTCTTTTGTGGTTCCATGTGCAGCCCTTATATATTTGCACTCCAATAGACATTGTTTTCCAGTGAGCcccaatgtatttattttacagtatagtaacaaaacatttcaaaacaatAACTAAAATGGCCCAGATTGAGTAAATTATAGGTAAAAGCATGGTAGCCCAAACCACTAATATTTCATCAAAAACAGTGTTTCATTAGTGCTTTCTTTAATGTTCTAAATATATTGTTTCGTATAATGCTCAGTTTTATAGCATAACCAAAACCTTTACAACAAGCAAGAGGAAAGACTGACAGGTCATTCATTTTTAAGAACTCAGTGGTGTTTTTAGACCAACCCATAGAAGACTAAAGGAAAccgaaaatacaaataaaatacatgcAAATGTTATGCATGTTGGCCATTTATCTTGCTGTAAGCATTGAAGTGTTAATGAGAGGGCAGGATGGGAAGACAATAACAGAATATTGATGATTGATGCAAAAACAAGGAACATTGGTATTTTGCTTTGATAACATATGTTAAACCACTGATAACCACTGATTTAATCAAATGCAAGTTTAATTGTAATACCATCAAACCCCACCTGATTGAAATCAGAATAACATATACTGTGTAGGGCCCAAATTGAACACAGAGCTTTAAAAGGGAAATGCTGTCATTTATTCTACAGCAAGACAGGGTCTACATCTCAGTCTTTAAACTCCATGAATAGGCCTAAACATACAATACTCATCTAGACATTGTCTGTGCCCCAAATgggaccatattccctatattgtgcactacttggTCAAAAATAGAGAATAGgctgcaatttgggacacattgTTATCTAGAGATAATGGGCAAGAGTCAAAGGTCAGTAGTAGTTTCAAGAACTGCACTAAAAAGCAGCAAATATTTAGatgattttgaaaacaaaacttgTCAATGTATACCGTATGTACATCAGAGCTATGCAAATTATGTAAACACAACCACCTGTCAGTGCTTTCTCAGGCTGCCAGTCAAACAGTGCATCCTTTCCAACGGTCATGACTGTTAGTATAGTAAAGGGAAGAGTAGGACTTGACTTTCAGACTATCGTGCTCTCAACTCctcccacatacagtgccttgcgaaagtattcgCTGTGTTAATTATCCATGATGCTACTTTCAAAAAGTATTCAATTTGGGAAGACAGACTTAAGTCTCCTTTAAACATCTAAGGCACACTTTTTATCCAACTCAAATCAAAGCATACAGTGCAtgcggaaagtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463581 lncRNA downstream 2808 48220274 ~ 48220492 (-) True G408666
TU463577 lncRNA downstream 4841 48218126 ~ 48218459 (-) True G408663
TU463576 lncRNA downstream 5235 48217472 ~ 48218065 (-) True G408662
TU463536 lncRNA downstream 58927 48163590 ~ 48164373 (-) True G408623
TU463501 lncRNA downstream 120731 48102108 ~ 48102569 (-) True G408591
TU463585 lncRNA upstream 3309 48230165 ~ 48255834 (-) True G408669
TU463582 lncRNA upstream 29436 48256292 ~ 48279779 (-) True G408667
TU463596 lncRNA upstream 121344 48348200 ~ 48349152 (-) True G408678
TU463717 lncRNA upstream 133561 48360417 ~ 48360742 (-) True G408787
TU463747 lncRNA upstream 169892 48396748 ~ 48397100 (-) True G408817
XM_021603201.2 mRNA downstream 97622 48106327 ~ 48125678 (-) True nup54
XM_021603203.2 mRNA downstream 97623 48106327 ~ 48125677 (-) False nup54
XM_021603215.2 mRNA upstream 198009 48424865 ~ 48447883 (-) False LOC110523983
XM_021603214.2 mRNA upstream 198009 48424865 ~ 48447888 (-) False LOC110523983
XM_021603219.2 mRNA upstream 313226 48540082 ~ 48544179 (-) False pdcl
XM_021603220.2 mRNA upstream 313226 48540082 ~ 48544179 (-) False pdcl
XM_021603221.2 mRNA upstream 313226 48540082 ~ 48544432 (-) False pdcl
TU463578 other downstream 80 48221952 ~ 48223220 (-) True G408664
TU461500 other downstream 1613185 46604229 ~ 46610115 (-) True LOC110523962
TU461254 other downstream 1988763 46219667 ~ 46234537 (-) True G406588
TU460699 other downstream 2199460 46021154 ~ 46023840 (-) True LOC110523950
TU460686 other downstream 2233817 45982838 ~ 45989483 (-) False G406076
TU463710 other upstream 126446 48353302 ~ 48357240 (-) False G408782
TU463712 other upstream 126792 48353648 ~ 48357240 (-) False G408782
TU463709 other upstream 126855 48353711 ~ 48357240 (-) False G408782
TU463711 other upstream 126855 48353711 ~ 48357565 (-) True G408782
TU465237 other upstream 1307060 49533916 ~ 49576456 (-) True G410168

Expression Profile