RNA id: TU463711


Basic Information

Item Value
RNA id TU463711
length 3855
RNA type TUCP
GC content 0.60
exon number 1
gene id G408782
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48353302 ~ 48357565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAATGCAGTGTACTTAACGTTTATTTGTACAAGAAATCTTATTTAGAGAAAACGAAAAATGTAGATATATATTGTGAATCGCTCataaaatttgaaaaaaaaaaagaagattttTAGGCTATATCACCCAGGCCTACAGAGTACTCCCCCGCCCTAAACTCCATTACATCCCACAGGCAAATTAAACCGTACAAATACTGTAGCGTCACTCCACAATAGTTTGTGAAATATACGGTCTCAAGAGAACCAGATATCCTAGACCTGTGATTCAACATATAACCTGCTGCAAGCAACACTGATAGACTTGTGAGTATGTGTACCTGATAATACTGCTGTGCTCTGGGGTCCACAGGTGCAGGTGGGTACTGAGCAGGAAGATATGATCCTCTGCCATCTGGGTACTCCGGGTAGGCACCTCCGTAGTATCCCCCATACACCTGCCCTGGGGGAGGTGGGCCGTACCCCAGCTGGCTTCCCAGAGACGAGGGAGGTCGCGGTGGGTCTGTAGGGGCTGGCTGGGCTGAAGGAACCCCGGTTCCTGGTGGATGAGGGTTGGCTAGAGGCACATGTCCCCGAGGCCCAGGATAAGCCACAGAGGGGGTGGGTGCATTCCCTGTGACAGGACCCTGCATCGGGGTTGGGTACTGCCCTTGCGGTGGTGGTGCTCCACTGAGAGGGGCTGCAGGGTCATCTCCTTGGCCTTGGTGCCCAGGCTGTGGCACCATGGGTGGCTCAGAGGGTGGTTGTTGGGTGTTTGGGGCCACTGGGGGGGGCATGGGATCGGCAGGCATCTGTGCTGTGGAGGCGTCCCCATTGCCTCTACTCACCTGCTGAGCATCTTTGGTGACCTGCAGGTAAAACCCAGGAGCGTTACTCGCGAGGGGCGGGCcctgctggagggagagaggtggcagCCCTGCGGCTTGGTTTGGGATCTGAGATTGGTGCATAGAAAAATCAAGCAGCTCGTAATTTGAGAGCTGATTATAATTGCCGGCACCAGGAGCAGCAGGAAGAGGAGCCTGCAAATTAACAGGTAGAGAAGAATGGTTGTTTCTGCACGTTGATTGGACCTttgagagaggggagcgagcAGGCTGGGACTGGGATGGTGGGGGCGTGATCTCTGGTTTAACCCCTTCCCTGTCATCCCGAACAAGATTGAGAGGGCTCTGACTAGAGGCGACGCTGAAGCTCATTGGTGTAGGGGCAAATAATGGGTTCTGATTGGAGCTCAAGGGAGGACCGGGCTGTGCGGCACTGGCCCCTTGAGCCTGTGAGGGTGGCCTCACAGGTACTGTGACCTCCCTGGGGCTGACCTGATTGGCTGCGAGTGCAGGGTTACTGGGAGGAATCACGCTGTAATTGGAGGTGGGTGGGGCAATCAACACGGGCTGGTGGAGCGATTCAGACACCAGGAGAGAGGCATAGCCCAGATTGGGCTGCGAGTCAGACGTGTCCCCCTCACTCACCTTAGGAGGGTTCTCCAGGTTCTCCGAGGGGTGCTGGGAGGGCGGAGGGGCACGTTGAGGGGGCTGAAGGTCCAAGGAGCCATCCTCGGGGGGCTGGATGACCTCGGCACTGGGCTCTCGCAGTGGGGCAAGGACCGGAGGGGCAGCGGGGACCAGCAGGATGTTGGTTCCCAGGCTAGCGGGGTCATGTTGGGCCCACAGGGTGGTGGCAGGGCTCTCACAGGGCCGGTGGGCCACATGAGCCCGGGACGAGGGCCTGGAGTGGGAGTGACTCAGAGGGTATGCAAGAGGAGGTgccccagctccatccccagcttGAGTGTGCCCTGTAGCTGCTCCGTAGATATTCTCAAGGTTGTCTGGAGGCTGCTCCAGGTTCCCAGGCAGAGAGTCAGAGCCCCTCTCCGCCACCATCCGGGCACGGTCCACCTCCGCTGGGCGCACTGCGACACTGTGTGAGCGCACAGGCTCAAAGGAGGAGTTGGCACTAGCCTGGAAAATGCCGGTGGGTTTGGGAGGACTGGGCGTAGGGGGTTGGCTGTGGCACATTCTCTCCGGGATGCTCTGGTAAGCAGCAGCCATATCCCCGGCCGGAGAGGTGTCAATCTGCTCAAAGTAGCCTCCGGCAGCAGCTGAGGAGAATGCGTCCTCTGAGGGCCGAGGGCTCTCCTGCTGGATGAAGGTGCCCACCACTCCTTGGTGCCGGCGTGGAACTGTACCAGTGCCGCTGCCGTGGCTCAAGTTGCTGTAGCTAGAGGACACGCTGGCAGAACGTATGGGCCGGGGGACAGAGTCGGGGGTCTCCAGATTGGGGCCTGCCTCGTAGCAATCTCCCCCGTGGGCGGCTGCTACAGCAGGGTTGCTCTGGGGCTCGCTGGGTAGGACTTCCTGGTTGGGCACACACTCCAGGTTCTCCACATGGTCAAACTGGGCCTCAGCAGGTTTCTGCTGGATGGGTTTGCCAGCTCCAGGAAAGTTACCATCGTTCATGTAGGTTAATGATTGGCCAGCTTGTGGGGGGGGACCACGGTAACTGTGGGTGGCCTCTGCACCCGCCACCGGGTTGGCTTGGGGTTGAGGGCATGACATCTGCTGGTGATTATGGGAGGGCTGGAAGTCCTGGAGCCCATTCACTGCTCTGGCTCCCTCTCCGGCGAGGGTCTCCTCGTTCTCCACGTCGTTTCCTTTGAAAAACATGGAGATGGTGCCGTCTGGGATGAAGGGGACCGGCGCTGGGACCGGCGCTGGGCCAGGGGTTGATGCATGGTAAGATCCATAGTGGGATCCATGGTGAGACCCGGCCGAGTCGTGCCGATAGTGAGTTCTGGCTGAGTCGGGCCGAGCCAGGCCAGGGCCAGCTCCCATCTGGTGGTAGACCAGGTCCTGGGGGTGCTGGTTGAACCAGGAGTCCAGGGTGGCTGAGCTCTGGCTGAAGTAGGTCTGAGCCTGAAAATGGGCGTTGTGTTGCTGGGGTGTGTTCGCACCTGCCAGGTCAGGCCACTGGGAGCTAGTTGGCCTGTCTGGGTGCTGAGGTGGTGGTTGGGGCTGGTGTTGCTGCTGGGGGTTTGTTGGAGGGGTGTTGCAGGGCAAGGGTGTGTGTGGAGATATTTGGGACTGGGGAGGGGCATTACAAACCTGGGGTAGAGGATCACTAGTGGGTTGGAAATAGTTCTGAACCGACGGGGGGCGGCTCCCATGATCGGGCACCCACTGAGACAAAACGGGAGGCACAGGCTTAAAGGGCATCGCCTGAGGGTGATGGTCTCCTCCGTGGTCCTGACCATAAGGCGCTTGGCCAGACATAGCGGCTGAGGCCATGGGAAGGTGTCCTGGGGTCATCGAGGGGGCTGGCTCCCTAGAGTTAAAATAGCCCTGCTCTGCACTTGGTGGTGCATGGCCTGGCGGGTCAGGTTGCTGTCCAGGGAAAGGGACAGGGGACGCAGTACCGTGAGGGGTTAAGATGCTTACCCCAGGGGTAGAGGGCGGTGGTGGGCCAAGGGGCACAGCCCCAGCCTGTGCACTATCCAGTGGTTGTGGTTGGTGCAGCCCCTGACCCATGCCAGCCTGGTGGTACATACCGGGAGGCAGGGCTTGCAAAGGCAGAGGGCTGCTATTGGGTGGCGGCAGGTGACCTGTAGCCATAGGAGGAGGGGCTTGCCTGCCAAATGCAAAGGGGTCTGTCATGGGCTGGGCTGGTAGTCCCGCCATGACCGCTGCTCCTGTATGCTTGTGGGGCCTTGTCCTCCGGAAGGCATTGGGCCCAACGCCGGCAGGAGGGGGGCCGGATGCACCAGGGGGGCCGGTCCGAGGAGGGGGCTGCATGGCTGCAGTTCTGACAGGTCCAAGGACCAGGCCACTCGATAGTGACGTCACTGAAGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463596 lncRNA downstream 4559 48348200 ~ 48349152 (-) True G408678
TU463582 lncRNA downstream 73932 48256292 ~ 48279779 (-) True G408667
TU463585 lncRNA downstream 97877 48230165 ~ 48255834 (-) True G408669
TU463579 lncRNA downstream 126855 48223300 ~ 48226856 (-) True G408665
TU463581 lncRNA downstream 133219 48220274 ~ 48220492 (-) True G408666
TU463717 lncRNA upstream 2852 48360417 ~ 48360742 (-) True G408787
TU463747 lncRNA upstream 39183 48396748 ~ 48397100 (-) True G408817
TU463750 lncRNA upstream 42457 48400022 ~ 48401091 (-) True G408820
TU463751 lncRNA upstream 43600 48401165 ~ 48401479 (-) True G408821
TU463754 lncRNA upstream 54099 48411664 ~ 48412145 (-) True G408824
XM_021603201.2 mRNA downstream 228033 48106327 ~ 48125678 (-) True nup54
XM_021603203.2 mRNA downstream 228034 48106327 ~ 48125677 (-) False nup54
XM_021603215.2 mRNA upstream 67300 48424865 ~ 48447883 (-) False LOC110523983
XM_021603214.2 mRNA upstream 67300 48424865 ~ 48447888 (-) False LOC110523983
XM_021603219.2 mRNA upstream 182517 48540082 ~ 48544179 (-) False pdcl
XM_021603220.2 mRNA upstream 182517 48540082 ~ 48544179 (-) False pdcl
XM_021603221.2 mRNA upstream 182517 48540082 ~ 48544432 (-) False pdcl
TU463578 other downstream 130491 48221952 ~ 48223220 (-) True G408664
TU461500 other downstream 1743596 46604229 ~ 46610115 (-) True LOC110523962
TU461254 other downstream 2119174 46219667 ~ 46234537 (-) True G406588
TU460699 other downstream 2329871 46021154 ~ 46023840 (-) True LOC110523950
TU460686 other downstream 2364228 45982838 ~ 45989483 (-) False G406076
TU465237 other upstream 1176351 49533916 ~ 49576456 (-) True G410168
TU466579 other upstream 2261326 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 2364749 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 2365594 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 2822193 51179758 ~ 51184775 (-) False LOC110524003

Expression Profile