RNA id: TU463754


Basic Information

Item Value
RNA id TU463754
length 482
lncRNA type intronic
GC content 0.48
exon number 1
gene id G408824
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48411664 ~ 48412145 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttacaccactccagccaacgtttggcattgcacatggtgaacTTATGCACATGGTGaacggctgctcggccatggaaacccattgcttgaagctcccgatgaacagttctggtgctgacgttgcttccagagacagtttggaactcggctgTGAATGTTGCAACCGGAGACAGGCGATTTTTACGCATTACGCGCTTCAACATTCGGCGGTCCCGGTCTTTGAGCTTgtctggcctaccacttcgcagctgagttgttgttcctagacatttccacctcacaataacagcacttacagttgaccggagcagctctagcagggcagaaatttgacgaactggcttgttggaaaggtggtaccatgttgaaagtcacttcagtaaggccattcaactgccaatgtttgtctatggagattgcatggctgtgtactcgaTTTTATATAATAGCCGAATCCATTAAttggtccacatactttta

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463751 lncRNA downstream 10185 48401165 ~ 48401479 (-) True G408821
TU463750 lncRNA downstream 10573 48400022 ~ 48401091 (-) True G408820
TU463747 lncRNA downstream 14564 48396748 ~ 48397100 (-) True G408817
TU463717 lncRNA downstream 50922 48360417 ~ 48360742 (-) True G408787
TU463596 lncRNA downstream 62512 48348200 ~ 48349152 (-) True G408678
TU463753 lncRNA upstream 1109 48413254 ~ 48413985 (-) True G408823
TU463755 lncRNA upstream 2830 48414975 ~ 48415257 (-) True G408825
TU463756 lncRNA upstream 3196 48415341 ~ 48415734 (-) True G408826
TU463759 lncRNA upstream 11409 48423554 ~ 48489102 (-) True LOC110523983
TU463790 lncRNA upstream 69653 48481798 ~ 48484591 (-) True G408855
XM_021603201.2 mRNA downstream 285986 48106327 ~ 48125678 (-) True nup54
XM_021603203.2 mRNA downstream 285987 48106327 ~ 48125677 (-) False nup54
XM_021603215.2 mRNA upstream 12720 48424865 ~ 48447883 (-) False LOC110523983
XM_021603214.2 mRNA upstream 12720 48424865 ~ 48447888 (-) False LOC110523983
XM_021603219.2 mRNA upstream 127937 48540082 ~ 48544179 (-) False pdcl
XM_021603220.2 mRNA upstream 127937 48540082 ~ 48544179 (-) False pdcl
XM_021603221.2 mRNA upstream 127937 48540082 ~ 48544432 (-) False pdcl
TU463711 other downstream 54099 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 54424 48353302 ~ 48357240 (-) False G408782
TU463712 other downstream 54424 48353648 ~ 48357240 (-) False G408782
TU463709 other downstream 54424 48353711 ~ 48357240 (-) False G408782
TU463578 other downstream 188444 48221952 ~ 48223220 (-) True G408664
TU465237 other upstream 1121771 49533916 ~ 49576456 (-) True G410168
TU466579 other upstream 2206746 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 2310169 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 2311014 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 2767613 51179758 ~ 51184775 (-) False LOC110524003

Expression Profile