RNA id: TU463807


Basic Information

Item Value
RNA id TU463807
length 3212
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id G408856
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48532422 ~ 48537040 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAACCCCTAAGTGCGCGCACACACGGTTGACAGACTAGAACCCCTACGTACGCGCACACACGGTCGACCGACTAGAACCCCTACGTACACACACAcaattgacaGATTAGAACccctacgtacacacacacacacagacgagaaCCCCTAAGTGCACGCACACACGGTCGACAGACTAGAACCCCTACGTACGCGCACACACGGTCGACCGACTAGAACccctacgtacacacacacacagacgagaaCCCCTAAGTGCACGCACACACGGTCGACAGACTAGAACCCCTACGTACGCGCACACACGGTCGACCGACTAGAACccctacgtacacacacacaattgacaGATTAGAACccctacgtacacacacaGTCGACAGACTAGAACCCCTATGTACGCGCACACACGGTCGGCCGACTAGAACccctacgtacacacacacaattgacaGATTAGAACccctacgtacacacacacaCAGACTAGAACCCCtacgtgcacgcacacacggTCGACAGACTAGAACCCCTACGTACGCGCACACACGGTCGACAGACTAGAACCCCTACGTACGCGCACACACGGTCGACAGACTAGAACccctacgtacGCGCACACACGGTCGACAGACTAGAACccctacgtacacacacacggtcGACCGACTAGAacccctacatacacacacacaattgacaGATTAGAACccctacgtacacacacacacacagacgagaacccctatgtgcacacacacacggtcgACAGACTAGAACCCCTACGTGCACACACACGGTCGACCGACTAGAAAccctacgtacacacacacacagacgagaacccctatgtgcacacacacacggtcgACAGACTAGAACCCCTACGTGCACACACACGGTCGACCGACTAGAACccctacgtacacacacacacacagttgacagactagaacccctacgtacacacacacacacacacacgatcgaCAGACCAGAACCCCTACGTGCGCACACACTTTTAAAGGTGCGATTTGACCTACAACTAAGACAGATTGAATGCGCTCAAATTCAATAGCGTGGTTTCCACTACCACGTTATCTCTCGGCTAGTCAGTGCTTGATACCGCCAGAGTTGTTTGAAATTGAGAAACTCAACATGCGATTACTTTACGCAAATACCTTGATGACAAATTTGCGACTCCCTTTGACGGTGGTGTGAAATTTTGTCATGGGCGTTACAGGAAGTCATTTCATGTTGTGGAGTCGCTCAGTTTTAAACGGCAATAGAGTTGTACTGGACACCATATTGGCAATATTAGCAAAATGCTAATTCAAAAAACAGTACCCTAATGCAGGGGTATTCAAATCTGAGCCTGGAGGTCCAGCGTAGTGCTGCTCTATGGGTTGACTAGATGGGATGCAGCGATTGTCAGAAGGGACTTTTCCTTGCAGGTTAGCAGAACTTACGCTGCAGGTTATAAAAATTAGGATTAGGTTAGGagagttaggttagggttagctaaaatgcaaaaatTCCCCCAACGCCACTCGAACATGCAACTTTTGATCTCACTTTGACATTAGCTGCAACTGTTCTAGCCATGGGGAAACGCTTATCATGGCACTTTGATACTGAAGTgactttttcgtagcaggttaggagactgaggttaaggttagtgaAAATgctttcctaacctgctacaaaaatCACTTTGTATCAAAGTGTTGTGAAAAGACTGTCTCTGTAGCCATGACCTGTTCTACCTGGGAAATGAATTGCACCCACATGGTGTCCCATGTCTAAATCAATGCCCGATTTAGAGGGAAAAAATGAAAAacagcagtggaactggcttcaaggtccagatttgaatttgCCTGCAGCTAGTGAAGTGGGTTGTTATGATCGACAGGACCTAAAGACCTATACATTCCTTCTTAAAATTAGATATTTATTCACCTAAGTTATATTTTTCATTACACATCATGTTAGTTTAACTAGTTACATGAATAAACCAAGACTGAGACCTATTATTTGTTTTACAATGATATGCagacattattattttttgatgTTTAAGCTTTAACTTATTTGTTTTTAATTGTGACAatgcattgttgttgtttttctggtCCAATGTCTCTTATTTGTGCATGTTTATCAAACTAGCTCACACTGTAGAAAATGTTCTGTCCAaagggacattttgttagttttATACCTGTTAATATTATGGATAAAATAAACTAGCTTGATTTGACTTACATGGTGTATTTTTGTTTAAGGGGTAGTAGTATGCATTCACAAAGCATGCAGCTTCTTCTTCTGGGGTATAAAGATGGCAATGATGCacactttttttttatctcaGAAGTTGTTCACCATTTACAATTGCTCCTGATTTACTGACAGTGAACATTTGAACAACCTGGTGCAAAGGCTACCAGTCCAAAAATTATAGTTGTTGTTTGGTTTGTAAGTTTTATTCAGACACTTTTTTTCAGTAACATTTTTGTAAATCACTGCAGGCTACATTCTGATTCTCCACCGTTTTCCCAAAGTGTGCACATTCACTGAATTTGTCATGAACTCAGCAATGGTGGAAACTCTCCAGACAATGATTACACCAATCCATTGCTTTTAAAGACATGATCTGAAGtgtgcacactttgggagaagTGTGGAGAATTGGGAAGCAGACCATATTGTGTCCAACACAACAGTGATTGCACATAATAGAAAGCTCAACGCTATGCTAAGCTAACAATATCACATCGTTGGTCTGTTTAAGACTGCCTCTTGATTTTTCAGCTTTCATGCATAAAACTTAACATTGCCCCTCTGGTGATTGTGATTTCCAAATACACTAAAAGTGCATATACATTTCACTACATATAGTTCATAGCAGACCAAACAATATATCACATTGACTAATTATAATACGATTGAAGGTCTTATTTCAAGACAAGCATTTTAAATGATCAGTCGATCAGTCAGCAACCCAAATACTGCCGTTTCAAGAGCACCATATTATTATTCTGAAAGAGCTTTCTCTAATCACCAATATGTTCCTTTGCAGATTGCAAAAAGCCTTGTAGAGATTGTCCAACCAATGATGACAGCCAATTTCAAACAGTCAATGTAGCCTAAAATGCTCCCAGTAGGAGGACAGTGATACAGGGGAGCGTTATCAAAAAGAGGGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463829 lncRNA downstream 18592 48513620 ~ 48513830 (-) True G408875
TU463827 lncRNA downstream 22587 48509537 ~ 48509835 (-) True G408873
TU463759 lncRNA downstream 43320 48423554 ~ 48489102 (-) True LOC110523983
TU463790 lncRNA downstream 47831 48481798 ~ 48484591 (-) True G408855
TU463756 lncRNA downstream 116688 48415341 ~ 48415734 (-) True G408826
TU463845 lncRNA upstream 8029 48545069 ~ 48545365 (-) True G408891
TU463848 lncRNA upstream 15184 48552224 ~ 48552468 (-) True G408894
TU463849 lncRNA upstream 15847 48552887 ~ 48553199 (-) True G408895
TU463870 lncRNA upstream 48387 48585427 ~ 48585672 (-) True G408912
TU463872 lncRNA upstream 49482 48586522 ~ 48586734 (-) True G408914
XM_021603214.2 mRNA downstream 84534 48424865 ~ 48447888 (-) False LOC110523983
XM_021603215.2 mRNA downstream 84539 48424865 ~ 48447883 (-) False LOC110523983
XM_021603201.2 mRNA downstream 406744 48106327 ~ 48125678 (-) True nup54
XM_036977730.1 mRNA downstream 406745 48106327 ~ 48125677 (-) False nup54
XM_021603219.2 mRNA upstream 3042 48540082 ~ 48544179 (-) False pdcl
XM_021603220.2 mRNA upstream 3042 48540082 ~ 48544179 (-) False pdcl
XM_021603221.2 mRNA upstream 3042 48540082 ~ 48544432 (-) False pdcl
XM_036977745.1 mRNA upstream 3042 48540082 ~ 48544432 (-) True pdcl
XM_021603223.2 mRNA upstream 37710 48574750 ~ 48580663 (-) True pdxp
TU463711 other downstream 174857 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 175182 48353302 ~ 48357240 (-) False G408782
TU463712 other downstream 175182 48353648 ~ 48357240 (-) False G408782
TU463709 other downstream 175182 48353711 ~ 48357240 (-) False G408782
TU463578 other downstream 309202 48221952 ~ 48223220 (-) True G408664
TU465237 other upstream 996876 49533916 ~ 49576456 (-) True G410168
TU466579 other upstream 2081851 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 2185274 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 2186119 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 2642718 51179758 ~ 51184775 (-) False LOC110524003

Expression Profile