RNA id: TU464232


Basic Information

Item Value
RNA id TU464232
length 857
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G409219
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48605653 ~ 48606623 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaagattttgcaattgttttagatgccattccctcaggtgttgctttattattcaggaacatgtcaagacctgaccctcagagcctaccttctgttgaccctgttgactcatcagtagaaaatatttgtttctcttttggtccattcaacaacagagcgatatgaaccttgtttcagcaggatgttgtatctatatcttgtcatgccttattggaatggatttattgataaaatctgttggaaaaaagtttggatgttgccacacacatacctacttgttaactaaattaaggaagtttcctttaaaattgttcataaatattatcctgccaaccactatatgaggaagtttaaggaaaacatcaactcaaaatgctcattttgtaatgaccacgcagaaacagtgttgcatcttttttggcattgtattcatgtaagaaaactggcaagacatcagtagatttataattgaacacatttaggATCTTACACTATTGTGGATAGATCtactgcttggattctttacctacaatagaaataagctgaaacatttttatgtaattaatttcattattcttttggccaaatttcatattcacaaatttaaatttacaaacaaaacaccacattttcttacctcacaaaaataaattaaactgtattttaagacgattaaataaatacagaaaatCTGTTAGAATAATAAGTGtatgtatgtcccttaaggtccttgtgtaatgtgatattgtactcCCTAGCCCAATTGTCctttgtatattatttatatatacttgtgttcccaCATGTACTTcttgtattgatttgttgtgaataaaaaaataaaaatagaggGTGA

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU463874 lncRNA downstream 17871 48587459 ~ 48587782 (-) True G408916
TU463872 lncRNA downstream 18919 48586522 ~ 48586734 (-) True G408914
TU463870 lncRNA downstream 19981 48585427 ~ 48585672 (-) True G408912
TU463849 lncRNA downstream 52454 48552887 ~ 48553199 (-) True G408895
TU463848 lncRNA downstream 53185 48552224 ~ 48552468 (-) True G408894
TU464225 lncRNA upstream 34705 48641214 ~ 48645375 (-) False G409218
TU464221 lncRNA upstream 34750 48641259 ~ 48645375 (-) False G409218
TU464219 lncRNA upstream 35044 48641553 ~ 48645375 (-) True G409218
TU464323 lncRNA upstream 179027 48785536 ~ 48792880 (-) True G409305
TU464324 lncRNA upstream 179560 48786069 ~ 48793643 (-) True G409306
XM_021603223.2 mRNA downstream 24990 48574750 ~ 48580663 (-) True pdxp
XM_021603221.2 mRNA downstream 61221 48540082 ~ 48544432 (-) False pdcl
XM_036977745.1 mRNA downstream 61221 48540082 ~ 48544432 (-) True pdcl
XM_021603219.2 mRNA downstream 61474 48540082 ~ 48544179 (-) False pdcl
XM_021603231.2 mRNA upstream 40397 48646906 ~ 48693022 (-) False mier3a
XM_036977749.1 mRNA upstream 40397 48646906 ~ 48693022 (-) False mier3a
XM_036977750.1 mRNA upstream 40397 48646906 ~ 48693022 (-) False mier3a
XM_036977751.1 mRNA upstream 40397 48646906 ~ 48693022 (-) True mier3a
XM_021603234.2 mRNA upstream 123474 48729983 ~ 48847550 (-) False LOC110523989
TU463711 other downstream 248088 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 248413 48353302 ~ 48357240 (-) False G408782
TU463712 other downstream 248413 48353648 ~ 48357240 (-) False G408782
TU463709 other downstream 248413 48353711 ~ 48357240 (-) False G408782
TU463578 other downstream 382433 48221952 ~ 48223220 (-) True G408664
TU465237 other upstream 927407 49533916 ~ 49576456 (-) True G410168
TU466579 other upstream 2012382 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 2115805 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 2116650 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 2573249 51179758 ~ 51184775 (-) False LOC110524003

Expression Profile