RNA id: TU465871


Basic Information

Item Value
RNA id TU465871
length 502
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G410779
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 50021449 ~ 50021950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCATCCAGATGAACGTAATGTAATATGAGAAGCTAACtccagtcccaaaatgttttatcTGCAGTGATGGGACTTCACAAACATCAAAGCAAAGGCAAAAGAGGATTTGAGTGGATGGAGTGAGTCTGAATACGCCTACACAGTGGTCCTTGACACAGTTCCCTTTTCCCGTATTATAGCTTGGTGTCTGTCTAAGCGAAAATTGGTACCATAGAAAACATGCAGGATGtctttgtttttctgttttcTCTACGTACCTCCAAAGTAGGAGCCGTCAGTCAGCTTCATCTCTTTGTTGAGCTTGGTGATAACACTGGCCACACCATGTTGGATGAAGTACATCTTCTTGCCCACGGTACCCTCTCTGATGATGTAATCGTTGGGTTGGAACACCTCGAACTTCAGCTTGCTCAACATGCCCGTCACGAAGTTGGGGTCTGCGTTGGCGAACAGTGGCATGGTAGCCACAAGCTTCCGGCAGTTGAAGTTCACAATTtcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465869 lncRNA downstream 3194 50017934 ~ 50018255 (-) True G410777
TU465865 lncRNA downstream 8389 50012857 ~ 50013060 (-) True G410773
TU465854 lncRNA downstream 23554 49997545 ~ 49997895 (-) True G410762
TU465851 lncRNA downstream 27946 49993265 ~ 49993503 (-) True G410759
TU465842 lncRNA downstream 40147 49981095 ~ 49981302 (-) True G410750
TU465909 lncRNA upstream 87981 50109931 ~ 50110240 (-) True G410809
TU465986 lncRNA upstream 163569 50185519 ~ 50185719 (-) True G410884
TU465998 lncRNA upstream 172198 50194148 ~ 50194376 (-) True G410896
TU466066 lncRNA upstream 221721 50243671 ~ 50244020 (-) True G410963
TU466154 lncRNA upstream 263098 50285048 ~ 50286664 (-) True G411046
XM_021603239.2 mRNA downstream 357867 49657986 ~ 49663582 (-) True LOC110523994
XM_036977752.1 mRNA downstream 650461 49088535 ~ 49370988 (-) True col27a1a
XM_036976507.1 mRNA downstream 1066580 48889781 ~ 48954869 (-) True notch1
NM_001135695.1 mRNA downstream 1066628 48881393 ~ 48954821 (-) False notch1
XM_021601323.2 mRNA upstream 123028 50144978 ~ 50150252 (-) True LOC110522869
XR_005051756.1 mRNA upstream 408770 50430720 ~ 50468722 (-) False LOC118964617
XR_005051755.1 mRNA upstream 408770 50430720 ~ 50468752 (-) False LOC118964617
XM_021603243.2 mRNA upstream 803659 50825609 ~ 50987810 (-) False LOC110523998
XM_021603244.2 mRNA upstream 803659 50825609 ~ 50987810 (-) False LOC110523998
TU465237 other downstream 444993 49533916 ~ 49576456 (-) True G410168
TU463711 other downstream 1663884 48353711 ~ 48357565 (-) True G408782
TU463710 other downstream 1664209 48353302 ~ 48357240 (-) False G408782
TU466579 other upstream 596941 50618891 ~ 50619175 (-) True G411459
TU467085 other upstream 700364 50722314 ~ 50723061 (-) True G411929
TU467086 other upstream 701209 50723159 ~ 50724077 (-) True G411930
TU467428 other upstream 1157808 51179758 ~ 51184775 (-) False LOC110524003
TU467562 other upstream 1351515 51373465 ~ 51377130 (-) True G412372

Expression Profile