RNA id: TU466715


Basic Information

Item Value
RNA id TU466715
length 253
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G411593
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 50718768 ~ 50719020 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCTGGTCACAGAGAACAAAGCacatggctagctagttggccAAAGCAGATTCTACCATTTCATAATAGCCTGTAATCACTAGTTATTACTTTTAAACAAGATACCTTTTTTTTTGTGGATTATTGTTGTTTGGTTTACTTTATGAACAGTCACTGAGATTATATTTGGTTATCAATGCAAAataggctactttgatgaatagCCTATATAGCCTATAGATCAGATCAAGGTTTCAAGCACCTACACTGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466713 lncRNA upstream 1526 50716997 ~ 50717242 (+) True G411591
TU466706 lncRNA upstream 5388 50713081 ~ 50713380 (+) True G411585
TU466694 lncRNA upstream 20647 50697895 ~ 50698121 (+) True G411573
TU466610 lncRNA upstream 76331 50642207 ~ 50642437 (+) True G411490
TU466594 lncRNA upstream 87549 50630912 ~ 50631219 (+) True G411474
TU466708 lncRNA downstream 103192 50822212 ~ 50824094 (+) False nr5a2
TU466707 lncRNA downstream 103221 50822241 ~ 50824373 (+) False nr5a2
TU466709 lncRNA downstream 105484 50824504 ~ 50825399 (+) True nr5a2
TU466864 lncRNA downstream 267566 50986586 ~ 50988857 (+) True G411740
TU466870 lncRNA downstream 276026 50995046 ~ 50995544 (+) True G411746
XM_021603242.2 mRNA upstream 645510 49889517 ~ 50073258 (+) False LOC110523996
XM_021601391.2 mRNA upstream 975938 49736646 ~ 49742830 (+) True LOC110522958
XM_036977753.1 mRNA upstream 986223 49694233 ~ 49732545 (+) True LOC110523995
XM_036977754.1 mRNA upstream 994149 49694223 ~ 49724619 (+) False LOC110523995
XM_021601390.1 mRNA upstream 1195315 49521853 ~ 49523453 (+) True LOC110522957
XM_021601246.2 mRNA downstream 10082 50729102 ~ 50824941 (+) False nr5a2
NM_001124236.1 mRNA downstream 18466 50737486 ~ 50821880 (+) False nr5a2
XM_021603254.2 mRNA downstream 340814 51059834 ~ 51138384 (+) False camsap2a
XM_021603255.2 mRNA downstream 340814 51059834 ~ 51138384 (+) False camsap2a
XM_021603256.2 mRNA downstream 340814 51059834 ~ 51138384 (+) False camsap2a
TU466639 other upstream 55128 50662872 ~ 50663640 (+) True G411519
TU465576 other upstream 795170 49889400 ~ 49923598 (+) True LOC110523996
TU464173 other upstream 1736997 48948138 ~ 48981771 (+) True G409191
TU463909 other upstream 2077153 48627030 ~ 48641615 (+) True setd9
TU463204 other upstream 2554881 48150175 ~ 48163887 (+) False LOC110523980
TU466908 other downstream 411344 51130364 ~ 51138384 (+) False camsap2a
TU466916 other downstream 411344 51130364 ~ 51138384 (+) True camsap2a
TU468094 other downstream 1083230 51802250 ~ 51802820 (+) True G412859
TU469325 other downstream 2042369 52761389 ~ 52761729 (+) True G414007
TU469359 other downstream 2059497 52778517 ~ 52779479 (+) True G414041

Expression Profile