RNA id: TU467318


Basic Information

Item Value
RNA id TU467318
length 473
lncRNA type intronic
GC content 0.42
exon number 1
gene id G412145
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 50994166 ~ 50994638 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catttggctaccaaaaaaaatccgaaaattcagtcctcaaaacgcgaacttttttccaaattaactccataatatcgactgaaaacatggcaaacgttgtttagaatcaatcatcaaggtgtttttcacatatctcttcattgatacatcgttcttggacacatgctttctcccctgaatcaaatggtaaagtagaagcagctggcaattgcgcaccgaattcgacgcaggacaccaggcggacacttggaaaatgtagtctcttatggtcaatcttccaatgatatgcctacaaatacgtcacaatgctgctaagaccttgggcgaacgacagaaagtgtaggctcattccttgcgcaatcacagccatataaggagacaatggaaaacagagcttcagaaattctgctaatccctggttgatgcatcatcttggtttcgcctgtagaatgagttctggggcacttacagac

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467182 lncRNA downstream 5658 50986603 ~ 50988508 (-) True G412011
TU467183 lncRNA downstream 168770 50824522 ~ 50825396 (-) True G412012
TU467083 lncRNA downstream 272944 50720788 ~ 50721222 (-) True G411927
TU466663 lncRNA downstream 313537 50680378 ~ 50680629 (-) True G411543
TU466662 lncRNA downstream 314047 50679546 ~ 50680119 (-) True G411542
TU467319 lncRNA upstream 458 50995096 ~ 50995522 (-) True G412146
TU467322 lncRNA upstream 2226 50996864 ~ 50997191 (-) True G412149
TU467324 lncRNA upstream 3541 50998179 ~ 50998757 (-) True G412151
TU467355 lncRNA upstream 50365 51045003 ~ 51045210 (-) True G412181
TU467358 lncRNA upstream 53924 51048562 ~ 51048779 (-) True G412184
XM_021603243.2 mRNA downstream 6356 50825609 ~ 50987810 (-) False LOC110523998
XM_021603244.2 mRNA downstream 6356 50825609 ~ 50987810 (-) False LOC110523998
XM_021603245.2 mRNA downstream 6356 50856090 ~ 50987810 (-) False LOC110523998
XM_021603246.2 mRNA downstream 6356 50856090 ~ 50987810 (-) False LOC110523998
XM_036977755.1 mRNA downstream 6356 50939717 ~ 50987810 (-) True LOC110523998
XM_021603259.2 mRNA upstream 157642 51152280 ~ 51173859 (-) False LOC110524002
XM_021603260.2 mRNA upstream 157642 51152280 ~ 51173859 (-) False LOC110524002
XM_021603261.2 mRNA upstream 157642 51152280 ~ 51173859 (-) False LOC110524002
XM_021603262.2 mRNA upstream 157642 51152280 ~ 51173860 (-) False LOC110524002
XM_021603264.2 mRNA upstream 157642 51152280 ~ 51173860 (-) False LOC110524002
TU467086 other downstream 270089 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 271105 50722314 ~ 50723061 (-) True G411929
TU466579 other downstream 374991 50618891 ~ 50619175 (-) True G411459
TU465237 other downstream 1417710 49533916 ~ 49576456 (-) True G410168
TU463711 other downstream 2636601 48353711 ~ 48357565 (-) True G408782
TU467428 other upstream 185120 51179758 ~ 51184775 (-) False LOC110524003
TU467562 other upstream 378827 51373465 ~ 51377130 (-) True G412372
TU467825 other upstream 563740 51558378 ~ 51612562 (-) True G412613
TU470637 other upstream 2623045 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 2623100 53617738 ~ 53618864 (-) True G415256

Expression Profile