RNA id: TU467319


Basic Information

Item Value
RNA id TU467319
length 427
lncRNA type intronic
GC content 0.37
exon number 1
gene id G412146
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 50995096 ~ 50995522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagctgggctttacagaagagtggccagaaaaaaatccattgcttaacctttctgatctccccatcccggatccgggatcgtgaatacagactcaagctcattaccataacgcaacgttaactattcatgaaaatcgcaaatgaaatgaaataaatatgctagctctcaagcttagccttttgttaacactgtcatctcagattttcaaaatatgcttctcaaccattgcaaaacaagcatttgtgtaacagtattgatggctaacgtagcatttagcattagcattcagctggcaacatttacacaaaaaaacagaaaagcattcaaataaaatcatttacctttgaagaacttcagatgttttcaatgaggagactctcagatagcaaatgttcagtttttcctgaaagattatttgtttaggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467318 lncRNA downstream 458 50994166 ~ 50994638 (-) True G412145
TU467182 lncRNA downstream 6588 50986603 ~ 50988508 (-) True G412011
TU467183 lncRNA downstream 169700 50824522 ~ 50825396 (-) True G412012
TU467083 lncRNA downstream 273874 50720788 ~ 50721222 (-) True G411927
TU466663 lncRNA downstream 314467 50680378 ~ 50680629 (-) True G411543
TU467322 lncRNA upstream 1342 50996864 ~ 50997191 (-) True G412149
TU467324 lncRNA upstream 2657 50998179 ~ 50998757 (-) True G412151
TU467355 lncRNA upstream 49481 51045003 ~ 51045210 (-) True G412181
TU467358 lncRNA upstream 53040 51048562 ~ 51048779 (-) True G412184
TU467415 lncRNA upstream 144077 51139599 ~ 51149659 (-) True G412240
XM_021603243.2 mRNA downstream 7286 50825609 ~ 50987810 (-) False LOC110523998
XM_021603259.2 mRNA upstream 156758 51152280 ~ 51173859 (-) False LOC110524002
XM_021603260.2 mRNA upstream 156758 51152280 ~ 51173859 (-) False LOC110524002
XM_021603261.2 mRNA upstream 156758 51152280 ~ 51173859 (-) False LOC110524002
XM_021603262.2 mRNA upstream 156758 51152280 ~ 51173860 (-) False LOC110524002
XM_021603264.2 mRNA upstream 156758 51152280 ~ 51173860 (-) False LOC110524002
TU467086 other downstream 271019 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 272035 50722314 ~ 50723061 (-) True G411929
TU466579 other downstream 375921 50618891 ~ 50619175 (-) True G411459
TU465237 other downstream 1418640 49533916 ~ 49576456 (-) True G410168
TU463711 other downstream 2637531 48353711 ~ 48357565 (-) True G408782
TU467428 other upstream 184236 51179758 ~ 51184775 (-) False LOC110524003
TU467562 other upstream 377943 51373465 ~ 51377130 (-) True G412372
TU467825 other upstream 562856 51558378 ~ 51612562 (-) True G412613
TU470637 other upstream 2622161 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 2622216 53617738 ~ 53618864 (-) True G415256

Expression Profile