RNA id: TU467475


Basic Information

Item Value
RNA id TU467475
length 254
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G412295
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51263449 ~ 51263702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATTCTTGAACAGCTCAATCTAGAGACACCTAACCAACTTTCACATGTTCAGTCTATTCTAACTTCAAATTCTTTCAAATCTTAATGAACTACAACTATGTAAATGTGCATACATTTGCATAAATTAACTCACCAACAGTAACTCTGGAACCGTTCAAGCTAGAGACACAAACAAACTTtcacatgttcaggctatcctatTTTTTcatatcaatcaaccaatcaacctatcaatcaatcaataaataaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467430 lncRNA downstream 34944 51179758 ~ 51228505 (-) True LOC110524003
TU467415 lncRNA downstream 113790 51139599 ~ 51149659 (-) True G412240
TU467358 lncRNA downstream 214670 51048562 ~ 51048779 (-) True G412184
TU467355 lncRNA downstream 218239 51045003 ~ 51045210 (-) True G412181
TU467324 lncRNA downstream 264692 50998179 ~ 50998757 (-) True G412151
TU467554 lncRNA upstream 26275 51289977 ~ 51335248 (-) True G412365
TU467613 lncRNA upstream 126743 51390445 ~ 51395338 (-) True G412422
TU467618 lncRNA upstream 133192 51396894 ~ 51405294 (-) True G412426
TU467626 lncRNA upstream 143470 51407172 ~ 51407454 (-) True G412432
TU467627 lncRNA upstream 145601 51409303 ~ 51409543 (-) True G412433
XM_021603266.2 mRNA downstream 37632 51217912 ~ 51225817 (-) False LOC110524003
XM_036977760.1 mRNA downstream 37632 51222516 ~ 51225817 (-) False LOC110524003
XM_036977761.1 mRNA downstream 37632 51222516 ~ 51225817 (-) False LOC110524003
XM_021603265.2 mRNA downstream 37635 51179758 ~ 51225814 (-) False LOC110524003
XM_036977759.1 mRNA downstream 89017 51152280 ~ 51174432 (-) True LOC110524002
XM_021603270.2 mRNA upstream 33015 51296717 ~ 51382148 (-) False LOC110524005
XM_021603271.2 mRNA upstream 33015 51296717 ~ 51382520 (-) False LOC110524005
XM_021603269.2 mRNA upstream 33015 51296717 ~ 51382751 (-) True LOC110524005
XM_036979048.1 mRNA upstream 369595 51633297 ~ 51768111 (-) True LOC110522962
XM_036977770.1 mRNA upstream 776706 52040408 ~ 52100583 (-) False LOC110522967
TU467428 other downstream 78674 51179758 ~ 51184775 (-) False LOC110524003
TU467086 other downstream 539372 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 540388 50722314 ~ 50723061 (-) True G411929
TU466579 other downstream 644274 50618891 ~ 50619175 (-) True G411459
TU465237 other downstream 1686993 49533916 ~ 49576456 (-) True G410168
TU467562 other upstream 109763 51373465 ~ 51377130 (-) True G412372
TU467825 other upstream 294676 51558378 ~ 51612562 (-) True G412613
TU470637 other upstream 2353981 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 2354036 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 2627058 53890760 ~ 53892906 (-) True G415420

Expression Profile