RNA id: TU468094



Basic Information


Item Value
RNA id TU468094
length 571
RNA type TUCP
GC content 0.41
exon number 1
gene id G412859
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 51802250 ~ 51802820 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaggaaaatattatgattattagaaagcaaattacggactcctctttaaatctgcgtattccttcaaagctcagttgtcctgagtctgcacaactctgccaggacctaggatcaagagagacgctcaagtgttttagtactatatctcttgacacaatgatgaaaataatcatggcctctaaaccttcaagctgcatactggaccctattccaactaaactactgaaagagctgcttcctgtgcttggccctcctatgttgaacataataaacggctctctatccaccggatgtgtaccaaactcactaaaagtggcagtaataaaacctctcttgaaaaagccaaaccttgacccagaaaatataaaaaactatcggcctatatcgaatcttccattcctctcaaaaattttagaaaaggctgttgcgcagcaactcactgccttcctgaagacaaacaatgtatacgaaatgcttcagtctggttttagaccctatcatagcactgagacggcacttgtgaaggtggtaaatgacattttaatggcatcggaccgaggctctgcatctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU468068 lncRNA upstream 18617 51782633 ~ 51783633 (+) True G412833
TU468020 lncRNA upstream 65847 51736127 ~ 51736403 (+) True G412786
TU467857 lncRNA upstream 181620 51620358 ~ 51620630 (+) True G412636
TU467688 lncRNA upstream 183799 51618027 ~ 51618451 (+) True G412485
TU467689 lncRNA upstream 185951 51613325 ~ 51616299 (+) True G412486
TU468097 lncRNA downstream 1759 51804579 ~ 51817658 (+) True G412861
TU468124 lncRNA downstream 25299 51828119 ~ 51828462 (+) True G412888
TU468128 lncRNA downstream 35640 51838460 ~ 51838764 (+) True G412892
TU468146 lncRNA downstream 55043 51857863 ~ 51858086 (+) True G412907
TU468154 lncRNA downstream 63073 51865893 ~ 51866114 (+) True G412914
XM_021603282.2 mRNA upstream 92306 51692900 ~ 51709944 (+) False LOC110524009
XM_021603283.2 mRNA upstream 92306 51693225 ~ 51709944 (+) True LOC110524009
XM_036977765.1 mRNA upstream 241757 51436948 ~ 51560493 (+) False LOC110522961
XM_036977763.1 mRNA upstream 366759 51419430 ~ 51435491 (+) True LOC110524007
XR_005051945.1 mRNA upstream 406619 51395577 ~ 51395631 (+) True LOC118964752
XM_036979049.1 mRNA downstream 210747 52013567 ~ 52031827 (+) True LOC110524010
XM_021603288.2 mRNA downstream 303748 52106568 ~ 52109708 (+) False LOC110524011
XM_021603289.2 mRNA downstream 304182 52107002 ~ 52109717 (+) False LOC110524011
XM_021603286.2 mRNA downstream 304906 52107726 ~ 52109708 (+) False LOC110524011
XM_021603287.2 mRNA downstream 304906 52107726 ~ 52109717 (+) True LOC110524011
TU466908 other upstream 663866 51130364 ~ 51138384 (+) False camsap2a
TU466916 other upstream 663866 51130364 ~ 51138384 (+) True camsap2a
TU466639 other upstream 1138610 50662872 ~ 50663640 (+) True G411519
TU465576 other upstream 1878652 49889400 ~ 49923598 (+) True LOC110523996
TU464173 other upstream 2820479 48948138 ~ 48981771 (+) True G409191
TU469325 other downstream 958569 52761389 ~ 52761729 (+) True G414007
TU469359 other downstream 975697 52778517 ~ 52779479 (+) True G414041
TU469816 other downstream 1309363 53112183 ~ 53112507 (+) True G414488
TU471018 other downstream 2375109 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 2526375 54329195 ~ 54329780 (+) True G415808

Expression Profile