RNA id: TU468630


Basic Information

Item Value
RNA id TU468630
length 208
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G413358
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52402197 ~ 52402404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttataggatatttcaaacttttttaacaaataaaaaactgaaaaattgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468613 lncRNA upstream 25109 52376686 ~ 52377088 (+) True G413342
TU468456 lncRNA upstream 264204 52136525 ~ 52137993 (+) True G413206
TU468452 lncRNA upstream 268351 52132019 ~ 52133846 (+) True G413202
TU468411 lncRNA upstream 282747 52076296 ~ 52119450 (+) True G413163
TU468372 lncRNA upstream 321163 52021206 ~ 52081034 (+) True G413126
TU468651 lncRNA downstream 36386 52438790 ~ 52439079 (+) True G413377
TU469236 lncRNA downstream 301072 52703476 ~ 52703698 (+) True G413919
TU469276 lncRNA downstream 328751 52731155 ~ 52731519 (+) True G413959
TU469286 lncRNA downstream 334308 52736712 ~ 52738078 (+) True G413969
TU469408 lncRNA downstream 409842 52812246 ~ 52812492 (+) True G414089
XM_021603301.2 mRNA upstream 139141 52254713 ~ 52263056 (+) True LOC110524018
XR_005051758.1 mRNA upstream 153302 52246773 ~ 52248895 (+) True LOC118964618
XM_021603299.2 mRNA upstream 166901 52230095 ~ 52235296 (+) False LOC110524017
LOC118964714 mRNA downstream 473316 52875720 ~ 52896117 (+) True LOC118964714
XM_036977817.1 mRNA downstream 1001365 53403769 ~ 53462256 (+) False opa1
XM_036977818.1 mRNA downstream 1001365 53403769 ~ 53462256 (+) False opa1
XM_036977819.1 mRNA downstream 1001365 53403769 ~ 53462256 (+) False opa1
XM_036977820.1 mRNA downstream 1001365 53403769 ~ 53462256 (+) False opa1
TU468094 other upstream 599377 51802250 ~ 51802820 (+) True G412859
TU466908 other upstream 1263813 51130364 ~ 51138384 (+) False camsap2a
TU466916 other upstream 1263813 51130364 ~ 51138384 (+) True camsap2a
TU466639 other upstream 1738557 50662872 ~ 50663640 (+) True G411519
TU465576 other upstream 2478599 49889400 ~ 49923598 (+) True LOC110523996
TU469325 other downstream 358985 52761389 ~ 52761729 (+) True G414007
TU469359 other downstream 376113 52778517 ~ 52779479 (+) True G414041
TU469816 other downstream 709779 53112183 ~ 53112507 (+) True G414488
TU471018 other downstream 1775525 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 1926791 54329195 ~ 54329780 (+) True G415808

Expression Profile