RNA id: TU469325


Basic Information

Item Value
RNA id TU469325
length 341
RNA type TUCP
GC content 0.53
exon number 1
gene id G414007
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52761389 ~ 52761729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggatggatggggccatgtatcacgagatcttggctaacaacctccttccctcagtaagtgcattgaagatgggtcgtggctgggtcttccagcatgacaacgacccgaaacacacagctagggcaactaaggagtggctccgtaagaagcatctcaaggtcctggagtggcttagccagtctccagacctgaacctaatagaacatctttggagggagctgaaagtccgtattgcccagcgacagccccgaaacctgaaggatctggagaaggtctgtatggaggagtgggccaaaatccctgctgcagtgtgtgcaaacctggtcaagaactacagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469286 lncRNA upstream 23311 52736712 ~ 52738078 (+) True G413969
TU469276 lncRNA upstream 29870 52731155 ~ 52731519 (+) True G413959
TU469236 lncRNA upstream 57691 52703476 ~ 52703698 (+) True G413919
TU468651 lncRNA upstream 322310 52438790 ~ 52439079 (+) True G413377
TU468630 lncRNA upstream 358985 52402197 ~ 52402404 (+) True G413358
TU469408 lncRNA downstream 50517 52812246 ~ 52812492 (+) True G414089
TU469414 lncRNA downstream 53282 52815011 ~ 52815225 (+) True G414095
TU469426 lncRNA downstream 63016 52824745 ~ 52825290 (+) True G414107
TU469440 lncRNA downstream 73031 52834760 ~ 52834964 (+) True G414121
TU469543 lncRNA downstream 148584 52910313 ~ 52910530 (+) True G414223
XM_021603301.2 mRNA upstream 498333 52254713 ~ 52263056 (+) True LOC110524018
XR_005051758.1 mRNA upstream 512494 52246773 ~ 52248895 (+) True LOC118964618
XM_021603299.2 mRNA upstream 526093 52230095 ~ 52235296 (+) False LOC110524017
XM_021603298.2 mRNA upstream 526093 52230098 ~ 52235296 (+) False LOC110524017
XM_036977778.1 mRNA upstream 526093 52233518 ~ 52235296 (+) True LOC110524017
LOC118964714 mRNA downstream 113991 52875720 ~ 52896117 (+) True LOC118964714
XM_036977817.1 mRNA downstream 642040 53403769 ~ 53462256 (+) False opa1
XM_036977818.1 mRNA downstream 642040 53403769 ~ 53462256 (+) False opa1
XM_036977819.1 mRNA downstream 642040 53403769 ~ 53462256 (+) False opa1
XM_036977820.1 mRNA downstream 642040 53403769 ~ 53462256 (+) False opa1
TU468094 other upstream 958569 51802250 ~ 51802820 (+) True G412859
TU466908 other upstream 1623005 51130364 ~ 51138384 (+) False camsap2a
TU466916 other upstream 1623005 51130364 ~ 51138384 (+) True camsap2a
TU466639 other upstream 2097749 50662872 ~ 50663640 (+) True G411519
TU465576 other upstream 2837791 49889400 ~ 49923598 (+) True LOC110523996
TU469359 other downstream 16788 52778517 ~ 52779479 (+) True G414041
TU469816 other downstream 350454 53112183 ~ 53112507 (+) True G414488
TU471018 other downstream 1416200 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 1567466 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 1568351 54330080 ~ 54330480 (+) True G415809

Expression Profile