RNA id: TU469440


Basic Information

Item Value
RNA id TU469440
length 205
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G414121
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52834760 ~ 52834964 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctactacacatctctctctctctctctcgctctcaattcaaagggctttattggcatgggaaacatatatttacattgccaaagcaagtgaaatagataacaaGCAAAAGTGAAATAAGCAATCAAAAATgagcagtaaacattacactcacatacGTTTCAAACGAATAGagatatttcaaatgtcattcTATGTCTATAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469426 lncRNA upstream 9470 52824745 ~ 52825290 (+) True G414107
TU469414 lncRNA upstream 19535 52815011 ~ 52815225 (+) True G414095
TU469408 lncRNA upstream 22268 52812246 ~ 52812492 (+) True G414089
TU469286 lncRNA upstream 96682 52736712 ~ 52738078 (+) True G413969
TU469276 lncRNA upstream 103241 52731155 ~ 52731519 (+) True G413959
TU469543 lncRNA downstream 75349 52910313 ~ 52910530 (+) True G414223
TU469548 lncRNA downstream 79127 52914091 ~ 52914359 (+) True G414228
TU469571 lncRNA downstream 100773 52935737 ~ 52935959 (+) True G414251
TU469577 lncRNA downstream 103776 52938740 ~ 52938966 (+) True G414257
TU469586 lncRNA downstream 110456 52945420 ~ 52945706 (+) True G414266
XM_021603301.2 mRNA upstream 571704 52254713 ~ 52263056 (+) True LOC110524018
XR_005051758.1 mRNA upstream 585865 52246773 ~ 52248895 (+) True LOC118964618
XM_021603299.2 mRNA upstream 599464 52230095 ~ 52235296 (+) False LOC110524017
LOC118964714 mRNA downstream 40756 52875720 ~ 52896117 (+) True LOC118964714
XM_036977817.1 mRNA downstream 568805 53403769 ~ 53462256 (+) False opa1
XM_036977818.1 mRNA downstream 568805 53403769 ~ 53462256 (+) False opa1
XM_036977819.1 mRNA downstream 568805 53403769 ~ 53462256 (+) False opa1
XM_036977820.1 mRNA downstream 568805 53403769 ~ 53462256 (+) False opa1
TU469359 other upstream 55281 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 73031 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 1031940 51802250 ~ 51802820 (+) True G412859
TU466908 other upstream 1696376 51130364 ~ 51138384 (+) False camsap2a
TU469816 other downstream 277219 53112183 ~ 53112507 (+) True G414488
TU471018 other downstream 1342965 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 1494231 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 1495116 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 1511572 54346536 ~ 54350615 (+) False mutyh

Expression Profile