RNA id: TU469586



Basic Information


Item Value
RNA id TU469586
length 287
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G414266
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52945420 ~ 52945706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gaaAAGGAGTAACAAGAAAGGCTTGCTCCCGATCACGCACTTGATTCAtgtctggaaatttccactgtccactcattgaaagtgctgtatctccctcatgttcagagtaaaagcctgaaacaatgcctaaagactggtcacatgttgaggaagccatagagattgtgaactgggtcctaagtctttgtatggtggataggcattcaatggaaaaacagcctttccaaataatagtacttcctggatggattttcctcaagttttcgcctgccatatcagttctgtaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU469577 lncRNA upstream 6454 52938740 ~ 52938966 (+) True G414257
TU469571 lncRNA upstream 9461 52935737 ~ 52935959 (+) True G414251
TU469548 lncRNA upstream 31061 52914091 ~ 52914359 (+) True G414228
TU469543 lncRNA upstream 34890 52910313 ~ 52910530 (+) True G414223
TU469440 lncRNA upstream 110456 52834760 ~ 52834964 (+) True G414121
TU469606 lncRNA downstream 11089 52956795 ~ 52957517 (+) True G414286
TU469611 lncRNA downstream 15506 52961212 ~ 52961442 (+) True G414291
TU469810 lncRNA downstream 159329 53105035 ~ 53105325 (+) True G414482
TU469819 lncRNA downstream 170761 53116467 ~ 53116828 (+) True G414491
TU469820 lncRNA downstream 171909 53117615 ~ 53117916 (+) True G414492
LOC118964714 mRNA upstream 49303 52875720 ~ 52896117 (+) True LOC118964714
XM_021603301.2 mRNA upstream 682364 52254713 ~ 52263056 (+) True LOC110524018
XR_005051758.1 mRNA upstream 696525 52246773 ~ 52248895 (+) True LOC118964618
XM_021603298.2 mRNA upstream 710124 52230098 ~ 52235296 (+) False LOC110524017
XM_036977817.1 mRNA downstream 458063 53403769 ~ 53462256 (+) False opa1
XM_036977818.1 mRNA downstream 458063 53403769 ~ 53462256 (+) False opa1
XM_036977819.1 mRNA downstream 458063 53403769 ~ 53462256 (+) False opa1
XM_036977820.1 mRNA downstream 458063 53403769 ~ 53462256 (+) False opa1
XM_036977821.1 mRNA downstream 458064 53403770 ~ 53462256 (+) False opa1
TU469359 other upstream 165941 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 183691 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 1142600 51802250 ~ 51802820 (+) True G412859
TU466908 other upstream 1807036 51130364 ~ 51138384 (+) False camsap2a
TU469816 other downstream 166477 53112183 ~ 53112507 (+) True G414488
TU471018 other downstream 1232223 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 1383489 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 1384374 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 1400830 54346536 ~ 54350615 (+) False mutyh

Expression Profile