RNA id: TU469796


Basic Information

Item Value
RNA id TU469796
length 383
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G414468
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53083151 ~ 53083929 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaaattgagatttttgtgtcactggtctaaccacatttgtttttattcattaaaaatgaaaagctgaaatgtcttgtgtcaataagtagggcaagcctaaataacaTTTCTCTAGTTCCGTTTCCTAGTTTTGGGCATTTTGACcattctgtctgccctgaccccgagcctgcctgatTCTGACCTTTTGtaacctctgcctaccctgaccctgcctgccgtgcTGTACCTGCCTGATTCTGACCTGATtacaaacctctgcctgccctgaccccgagcctgcctgccgccctgtacctgcctgactctgatctGATCACACACTTCTGCCTGCCAtcgacctgccctttgcctgcccCGTGTTTCTAATAAATCTtctgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469646 lncRNA downstream 95043 52987891 ~ 52988108 (-) True G414325
TU469612 lncRNA downstream 121705 52961151 ~ 52961446 (-) True G414292
TU469598 lncRNA downstream 130665 52952113 ~ 52952486 (-) True G414278
TU469583 lncRNA downstream 139177 52943615 ~ 52943974 (-) True G414263
TU469529 lncRNA downstream 180615 52902187 ~ 52902536 (-) True G414209
TU469805 lncRNA upstream 15351 53099280 ~ 53099632 (-) True G414477
TU469815 lncRNA upstream 26946 53110875 ~ 53111104 (-) True G414487
TU469871 lncRNA upstream 69401 53153330 ~ 53153634 (-) True G414542
TU469887 lncRNA upstream 78998 53162927 ~ 53163334 (-) True G414558
TU470165 lncRNA upstream 133729 53217658 ~ 53218376 (-) True G414810
XM_036977783.1 mRNA downstream 395105 52404727 ~ 52688046 (-) True ptprsa
XM_036977788.1 mRNA downstream 463959 52404727 ~ 52619192 (-) False ptprsa
XM_036977811.1 mRNA upstream 162216 53246145 ~ 53333934 (-) False kdm4b
XM_036977812.1 mRNA upstream 162216 53246145 ~ 53333934 (-) False kdm4b
XM_036977813.1 mRNA upstream 162216 53246145 ~ 53333935 (-) True kdm4b
XM_036977816.1 mRNA upstream 250404 53334333 ~ 53351817 (-) False LOC110524026
XM_036977814.1 mRNA upstream 250404 53334333 ~ 53357072 (-) False LOC110524026
TU467825 other downstream 1470589 51558378 ~ 51612562 (-) True G412613
TU467562 other downstream 1706021 51373465 ~ 51377130 (-) True G412372
TU467428 other downstream 1898376 51179758 ~ 51184775 (-) False LOC110524003
TU467086 other downstream 2359074 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 2360090 50722314 ~ 50723061 (-) True G411929
TU470637 other upstream 533754 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 533809 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 806831 53890760 ~ 53892906 (-) True G415420
TU470869 other upstream 919802 54003731 ~ 54005673 (-) True G415464
TU471641 other upstream 1279357 54363286 ~ 54386228 (-) False G416110

Expression Profile