RNA id: TU469878


Basic Information

Item Value
RNA id TU469878
length 338
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G414549
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53157180 ~ 53157517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATAATTTGTTaaatgtttatttaacctttattttaccaggtaagttgactgagaacacattctcatttacagcaacgacctggggaatagttacaggggagaggtggagggatgaatgagccaattgtaagctggggatgattaggtgaccgtgatggtatgagggacagctgggaatttagccaggatacCGGGGTTAACACCACTCTCTTACAATAactgccatgggatctttattgaccacagagagtcaggacacccgtttaacatcccatccaaaagacagcaccctacacctGGCAATGTCCCCAATGCCTGCCCTggggacatttttattt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469827 lncRNA upstream 33673 53123210 ~ 53123507 (+) True G414499
TU469820 lncRNA upstream 39264 53117615 ~ 53117916 (+) True G414492
TU469819 lncRNA upstream 40352 53116467 ~ 53116828 (+) True G414491
TU469810 lncRNA upstream 51855 53105035 ~ 53105325 (+) True G414482
TU469611 lncRNA upstream 195738 52961212 ~ 52961442 (+) True G414291
TU469888 lncRNA downstream 6491 53164008 ~ 53164248 (+) True G414559
TU469912 lncRNA downstream 29226 53186743 ~ 53247569 (+) True G414580
TU469955 lncRNA downstream 98001 53255518 ~ 53261892 (+) True G414621
TU470036 lncRNA downstream 193639 53351156 ~ 53358259 (+) True G414684
TU470050 lncRNA downstream 208319 53365836 ~ 53366105 (+) True G414698
LOC118964714 mRNA upstream 261063 52875720 ~ 52896117 (+) True LOC118964714
XM_021603301.2 mRNA upstream 894124 52254713 ~ 52263056 (+) True LOC110524018
XR_005051758.1 mRNA upstream 908285 52246773 ~ 52248895 (+) True LOC118964618
XM_021603298.2 mRNA upstream 921884 52230098 ~ 52235296 (+) False LOC110524017
XM_036977817.1 mRNA downstream 246252 53403769 ~ 53462256 (+) False opa1
XM_036977818.1 mRNA downstream 246252 53403769 ~ 53462256 (+) False opa1
XM_036977819.1 mRNA downstream 246252 53403769 ~ 53462256 (+) False opa1
XM_036977820.1 mRNA downstream 246252 53403769 ~ 53462256 (+) False opa1
XM_036977821.1 mRNA downstream 246253 53403770 ~ 53462256 (+) False opa1
TU469816 other upstream 44673 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 377701 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 395451 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 1354360 51802250 ~ 51802820 (+) True G412859
TU466916 other upstream 2018796 51130364 ~ 51138384 (+) True camsap2a
TU471018 other downstream 1020412 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 1171678 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 1172563 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 1189019 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 1432557 54590074 ~ 54613142 (+) False G415946

Expression Profile