RNA id: TU469887


Basic Information

Item Value
RNA id TU469887
length 408
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G414558
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53162927 ~ 53163334 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttatacatctttaatgaaagatgaaaatagaacaaaaaacaagaaccgtgaaaaatcgaaacagccctatctggtgcaacaaacacagagacaggaaacaatcacccaccaaatacccaaagaatatggctgcctaaatatggttcccaatcagagacaacgataaacacctgcctctgattgagaaccactctaggcaaccatagactttcctagacaactctactaaacacaaccccataaatctaataaacccctagacaagacaagacacataaatcacccatgtcacaccctggcctgaccaaaataataaagaaaacacaaaatactaaggccagggtgtgacaccaGGTAAATGATGCTTTTCCTTGCTGATGTTTATGAAACTTGCATTCAACTCAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469871 lncRNA downstream 9293 53153330 ~ 53153634 (-) True G414542
TU469815 lncRNA downstream 51823 53110875 ~ 53111104 (-) True G414487
TU469805 lncRNA downstream 63295 53099280 ~ 53099632 (-) True G414477
TU469796 lncRNA downstream 78998 53083151 ~ 53083929 (-) True G414468
TU469646 lncRNA downstream 174819 52987891 ~ 52988108 (-) True G414325
TU470165 lncRNA upstream 54324 53217658 ~ 53218376 (-) True G414810
TU470234 lncRNA upstream 197978 53361312 ~ 53361578 (-) True G414877
TU470282 lncRNA upstream 260737 53424071 ~ 53434750 (-) False G414917
TU470287 lncRNA upstream 261362 53424696 ~ 53425162 (-) True G414922
TU470281 lncRNA upstream 267303 53430637 ~ 53481508 (-) True G414917
XM_036977783.1 mRNA downstream 474881 52404727 ~ 52688046 (-) True ptprsa
XM_036977788.1 mRNA downstream 543735 52404727 ~ 52619192 (-) False ptprsa
XM_036977811.1 mRNA upstream 82811 53246145 ~ 53333934 (-) False kdm4b
XM_036977812.1 mRNA upstream 82811 53246145 ~ 53333934 (-) False kdm4b
XM_036977813.1 mRNA upstream 82811 53246145 ~ 53333935 (-) True kdm4b
XM_036977816.1 mRNA upstream 170999 53334333 ~ 53351817 (-) False LOC110524026
XM_036977814.1 mRNA upstream 170999 53334333 ~ 53357072 (-) False LOC110524026
TU467825 other downstream 1550365 51558378 ~ 51612562 (-) True G412613
TU467562 other downstream 1785797 51373465 ~ 51377130 (-) True G412372
TU467428 other downstream 1978152 51179758 ~ 51184775 (-) False LOC110524003
TU467086 other downstream 2438850 50723159 ~ 50724077 (-) True G411930
TU467085 other downstream 2439866 50722314 ~ 50723061 (-) True G411929
TU470637 other upstream 454349 53617683 ~ 53618759 (-) False G415256
TU470639 other upstream 454404 53617738 ~ 53618864 (-) True G415256
TU470822 other upstream 727426 53890760 ~ 53892906 (-) True G415420
TU470869 other upstream 840397 54003731 ~ 54005673 (-) True G415464
TU471641 other upstream 1199952 54363286 ~ 54386228 (-) False G416110

Expression Profile