RNA id: TU470036


Basic Information

Item Value
RNA id TU470036
length 448
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G414684
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53351156 ~ 53358259 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTGCTTGCCCCGGTAAAAGAGCCTCTGTCTTTCTGGCTCAACCTTGAAGAGCTCCGAGATCTTGAGGCGCAGCTCATCCACCTTGGTGAGCTTGGACAGTGAGTCAATCCGATGAGTCTCCTTGCCATCCATGGTGCGCACTTGAATCCACATTGCAGCTGCCCTGTTTTTTTCTTCCAAATGTAGATAATTAAATTACGTTTAGTAAACCGTCAAGCTTAATCCGTACACAACTCCTCTGTATAGACTGCTTTCAGGGGACTGAATCAATGAGAATCTTCAACAGTGATTCCCCGCCTgccaaaaaaaaacaactttgTTTCACTATTGGCTATTACCACTTCTGAGTTGCTCTCTGAGGGGCTATAATACCTGTCACTCAAAACTGTGTCCGGAGTTTAGCCTCAGCGCGCGAAACCAGGGTCTCTTGTCTTCCGATAATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469955 lncRNA upstream 89264 53255518 ~ 53261892 (+) True G414621
TU469912 lncRNA upstream 103587 53186743 ~ 53247569 (+) True G414580
TU469888 lncRNA upstream 186908 53164008 ~ 53164248 (+) True G414559
TU469878 lncRNA upstream 193639 53157180 ~ 53157517 (+) True G414549
TU469827 lncRNA upstream 227649 53123210 ~ 53123507 (+) True G414499
TU470050 lncRNA downstream 7577 53365836 ~ 53366105 (+) True G414698
TU470114 lncRNA downstream 151257 53509516 ~ 53509915 (+) True G414761
TU470353 lncRNA downstream 189934 53548193 ~ 53548400 (+) True G414984
TU470355 lncRNA downstream 190492 53548751 ~ 53549688 (+) True G414985
TU470370 lncRNA downstream 203710 53561969 ~ 53562241 (+) True G415000
LOC118964714 mRNA upstream 455039 52875720 ~ 52896117 (+) True LOC118964714
XM_021603301.2 mRNA upstream 1088100 52254713 ~ 52263056 (+) True LOC110524018
XR_005051758.1 mRNA upstream 1102261 52246773 ~ 52248895 (+) True LOC118964618
XM_021603298.2 mRNA upstream 1115860 52230098 ~ 52235296 (+) False LOC110524017
XM_036977817.1 mRNA downstream 45510 53403769 ~ 53462256 (+) False opa1
XM_036977818.1 mRNA downstream 45510 53403769 ~ 53462256 (+) False opa1
XM_036977819.1 mRNA downstream 45510 53403769 ~ 53462256 (+) False opa1
XM_036977820.1 mRNA downstream 45510 53403769 ~ 53462256 (+) False opa1
XM_036977821.1 mRNA downstream 45511 53403770 ~ 53462256 (+) False opa1
TU469816 other upstream 238649 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 571677 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 589427 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 1548336 51802250 ~ 51802820 (+) True G412859
TU466916 other upstream 2212772 51130364 ~ 51138384 (+) True camsap2a
TU471018 other downstream 819670 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 970936 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 971821 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 988277 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 1231815 54590074 ~ 54613142 (+) False G415946

Expression Profile