RNA id: TU470370


Basic Information

Item Value
RNA id TU470370
length 217
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G415000
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53561969 ~ 53562241 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tatatggacggaatgaatcgaacaaaaggaccatttgtgatgtttatgggacatattggagttttgtgtcgtgcctgcagggttgaaatatgttttctctcttttgtttacggaggtgctatcctcagataatagcatcgtttgctttcgccgaaaagcctttttgaaatctgacatgttggctggattcacaacacgtgtagctttaatttggtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470355 lncRNA upstream 12281 53548751 ~ 53549688 (+) True G414985
TU470353 lncRNA upstream 13569 53548193 ~ 53548400 (+) True G414984
TU470114 lncRNA upstream 52054 53509516 ~ 53509915 (+) True G414761
TU470050 lncRNA upstream 195864 53365836 ~ 53366105 (+) True G414698
TU470036 lncRNA upstream 203710 53351156 ~ 53358259 (+) True G414684
TU470376 lncRNA downstream 3449 53565690 ~ 53565894 (+) True G415006
TU470383 lncRNA downstream 6706 53568947 ~ 53569219 (+) True G415013
TU470399 lncRNA downstream 19346 53581587 ~ 53581956 (+) True G415029
TU470408 lncRNA downstream 28701 53590942 ~ 53591162 (+) True G415038
TU470410 lncRNA downstream 30005 53592246 ~ 53592459 (+) True G415040
XM_036977820.1 mRNA upstream 99713 53403769 ~ 53462256 (+) False opa1
XM_021603322.2 mRNA downstream 54286 53616527 ~ 53618565 (+) True LOC110524030
XM_036977828.1 mRNA downstream 204529 53766770 ~ 53801558 (+) False LOC110524032
XM_036977829.1 mRNA downstream 204532 53766773 ~ 53801558 (+) False LOC110524032
XM_036977831.1 mRNA downstream 223349 53785590 ~ 53801558 (+) False LOC110524032
XM_036977832.1 mRNA downstream 224193 53786434 ~ 53801558 (+) True LOC110524032
TU469816 other upstream 449462 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 782490 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 800240 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 1759149 51802250 ~ 51802820 (+) True G412859
TU466916 other upstream 2423585 51130364 ~ 51138384 (+) True camsap2a
TU471018 other downstream 615688 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 766954 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 767839 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 784295 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 1027833 54590074 ~ 54613142 (+) False G415946

Expression Profile