RNA id: TU470376


Basic Information

Item Value
RNA id TU470376
length 205
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G415006
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53565690 ~ 53565894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctagagcagtgatgtttgggggctgttgctgggcaacacggactttcaactccctccaaatattttctatggggttgagatctggagactggctaggccactccagaaccttgaaatgcttcttacgaagccactccttcgttgccaggGCGGtgtgtcattgtcatgctgaaagacctagccacgtttcatcttcaatgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470370 lncRNA upstream 3449 53561969 ~ 53562241 (+) True G415000
TU470355 lncRNA upstream 16002 53548751 ~ 53549688 (+) True G414985
TU470353 lncRNA upstream 17290 53548193 ~ 53548400 (+) True G414984
TU470114 lncRNA upstream 55775 53509516 ~ 53509915 (+) True G414761
TU470050 lncRNA upstream 199585 53365836 ~ 53366105 (+) True G414698
TU470383 lncRNA downstream 3053 53568947 ~ 53569219 (+) True G415013
TU470399 lncRNA downstream 15693 53581587 ~ 53581956 (+) True G415029
TU470408 lncRNA downstream 25048 53590942 ~ 53591162 (+) True G415038
TU470410 lncRNA downstream 26352 53592246 ~ 53592459 (+) True G415040
TU470421 lncRNA downstream 45083 53610977 ~ 53611246 (+) True G415051
XM_036977820.1 mRNA upstream 103434 53403769 ~ 53462256 (+) False opa1
XM_021603322.2 mRNA downstream 50633 53616527 ~ 53618565 (+) True LOC110524030
XM_036977828.1 mRNA downstream 200876 53766770 ~ 53801558 (+) False LOC110524032
XM_036977829.1 mRNA downstream 200879 53766773 ~ 53801558 (+) False LOC110524032
XM_036977831.1 mRNA downstream 219696 53785590 ~ 53801558 (+) False LOC110524032
XM_036977832.1 mRNA downstream 220540 53786434 ~ 53801558 (+) True LOC110524032
TU469816 other upstream 453183 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 786211 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 803961 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 1762870 51802250 ~ 51802820 (+) True G412859
TU466916 other upstream 2427306 51130364 ~ 51138384 (+) True camsap2a
TU471018 other downstream 612035 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 763301 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 764186 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 780642 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 1024180 54590074 ~ 54613142 (+) False G415946

Expression Profile