RNA id: TU470408


Basic Information

Item Value
RNA id TU470408
length 221
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G415038
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53590942 ~ 53591162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acgagcccgacgTGAATGATATTACTgctctcccgggaacaggcccagatccccgtgatttgcgtgaagggaaggcggagaaaaaggggccaaaGTATGGGCTGCCTTCTGGGAATTCGTAGGCAATTAAGTAAACCCCAcctccttccattctgctagcaaacatgcaatctttggagaataaaataaaTGACCTAcgcagaagattaaactaccaacgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470399 lncRNA upstream 8986 53581587 ~ 53581956 (+) True G415029
TU470383 lncRNA upstream 21723 53568947 ~ 53569219 (+) True G415013
TU470376 lncRNA upstream 25048 53565690 ~ 53565894 (+) True G415006
TU470370 lncRNA upstream 28701 53561969 ~ 53562241 (+) True G415000
TU470355 lncRNA upstream 41254 53548751 ~ 53549688 (+) True G414985
TU470410 lncRNA downstream 1084 53592246 ~ 53592459 (+) True G415040
TU470421 lncRNA downstream 19815 53610977 ~ 53611246 (+) True G415051
TU470436 lncRNA downstream 52791 53643953 ~ 53644190 (+) True G415066
TU470438 lncRNA downstream 54313 53645475 ~ 53645726 (+) True G415068
TU470456 lncRNA downstream 82012 53673174 ~ 53673410 (+) True G415086
XM_036977820.1 mRNA upstream 128686 53403769 ~ 53462256 (+) False opa1
XM_021603322.2 mRNA downstream 25365 53616527 ~ 53618565 (+) True LOC110524030
XM_036977828.1 mRNA downstream 175608 53766770 ~ 53801558 (+) False LOC110524032
XM_036977829.1 mRNA downstream 175611 53766773 ~ 53801558 (+) False LOC110524032
XM_036977831.1 mRNA downstream 194428 53785590 ~ 53801558 (+) False LOC110524032
XM_036977832.1 mRNA downstream 195272 53786434 ~ 53801558 (+) True LOC110524032
TU469816 other upstream 478435 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 811463 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 829213 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 1788122 51802250 ~ 51802820 (+) True G412859
TU466916 other upstream 2452558 51130364 ~ 51138384 (+) True camsap2a
TU471018 other downstream 586767 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 738033 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 738918 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 755374 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 998912 54590074 ~ 54613142 (+) False G415946

Expression Profile