RNA id: TU470871


Basic Information

Item Value
RNA id TU470871
length 1675
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id G415464
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54002448 ~ 54005673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACTATATAATGCATATCATGTAGAGTTGTATTTTAGCTTAACATGAAGAAAAAAACTTTTGGGATATGAAAAATATTTTGTGTACCTTTTAGATGAACAAAATattaaaaaagaaaagaaacaaaaatcctaaatatatatttttattagtaACCAATGTTTCAGACAGATTGTGCATACTGTTGTATCTATTTCACAGGGATATCAAAAGGCTTTAAATTGGGTTGCACCATATTCTCAAATGAAACTTTATGAAATCTGACCTTTGAAGGGACATTTTCTCAGATGCACAGGCGTTGTGATCTATGATATGATCACAAAATCAATCTGAACGTCATTCATGGCAGCAATCACTCATGGGACCAATATGTGATTTGGCACAGATTTCATCCTAAACATAATAATGAAAGGGATGAATGATGAGCAATACGTAAACAACATGATCTTGCACTTTTCATTTTGTGTGTATCCCTAGAAGGAATGGCTAGCATACTGCTGTTTCCTCCTCTTTTTGGCTCTAACATGAGATATTACATTATacaaaaagagtgagagagacagggaaagttCCAGAAAAAGGAAAGCATCAGTAGTCCTCAGctggaagagagaaacagaaaaggGAGGTGTTACCCATAGATGAACCAGCTGAACCAAGCCAATGCGGAAGAGGAACATGCGATCCCATCCAATCATAGAAAGAGGAGCATGCGATCCCATCCAATCATAGGAAGATCagaaaactaaaacaggaagtggTATCATGCAGGCATGCAGTGGCAGTCAGACGGACGATTGCTTACTTTCTATCGTTAGGATACAAGTGCTGGCAGCGGTGCCTCTgctgttgacagctttgcacatgtaCTCTCCCTCGTCCTCTGGGAAGGTCTCTGGCAGGTAGAGGCAGaatgtctcccctctctctatgtacTGATAGTCCTCACAGTCCTGGAGCATATTCCCCTCAAACCACCAGGTCACCTCCGGCTTGGGCTCCCCAGTGATCTTCACCGTGAACCGCACTGGCTCGGCATCCACCACCGATTGGTTCTTCAGGGGCTTCTTAAACCACGGAGCCCCCGACCTGGCGtggtcctcctcatcctcatagGCTGCCGAGCCATTGATGAtgcttccctcttTTTTTGGAGAGCAGCGTCAATCTCTTGCTGCTCGAACTGCATCCTCTGCAGTTTCTGTTCCTCcacccttttcctctcctccccctctctggctTTGGCCATTTGTTCGAACCGTGCGCGCATGTCCACCTTCTGTCTGAACGGAGCCTCCTCAGCCCCCTTCTCTGTGTCCTTTTTGCCTTCATCATCCTCCTCCTGGACCcgctcttcttccctctctttgATTTCCTCGTCTACGGCCTTTCTCTTTGCTCTCACGTCCTCAATCGTTTTCTGGATCTCCTCGTCTTTCAACTGCTTGATCTTCTCAAACTTGGACTTGAGGTTCTTGGCCTGGATGGAGCCGGTCCTCTTGAGTTTCTTCAGCTCCTCATACTCCTTACTCACTGTATCAGAGCTCTCATTCACTTCATCTCTAGTTTCCCAGGGTGCAATGCTTCCTGGGACTCGCTCTTGAACATCCCTTCCTCTTCCTCGTCTAGCACCTGGCGGAATACAAACACAGAGCATGGTGTCATTTGACATTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470863 lncRNA downstream 7887 53994019 ~ 53994561 (-) True G415460
TU470765 lncRNA downstream 13226 53961942 ~ 53989222 (-) False LOC110524038
TU470767 lncRNA downstream 13226 53961957 ~ 53989222 (-) True LOC110524038
TU470842 lncRNA downstream 63149 53938168 ~ 53939299 (-) True G415439
TU470794 lncRNA downstream 147639 53854280 ~ 53854809 (-) True G415393
TU470876 lncRNA upstream 2466 54008139 ~ 54008478 (-) True G415468
TU470883 lncRNA upstream 5160 54010833 ~ 54011038 (-) True G415475
TU470885 lncRNA upstream 6273 54011946 ~ 54012151 (-) True G415477
TU470956 lncRNA upstream 69249 54074922 ~ 54075202 (-) True G415540
TU470962 lncRNA upstream 73510 54079183 ~ 54079454 (-) True G415546
XM_036977838.1 mRNA downstream 27330 53961942 ~ 53975118 (-) False LOC110524038
XM_036977839.1 mRNA downstream 29239 53961942 ~ 53973209 (-) False LOC110524038
XM_036977840.1 mRNA downstream 29241 53961942 ~ 53973207 (-) False LOC110524038
XM_036977837.1 mRNA downstream 29242 53961942 ~ 53973206 (-) False LOC110524038
XM_036977835.1 mRNA downstream 56846 53940943 ~ 53945602 (-) True prrg1
XR_002473526.2 mRNA upstream 28830 54034503 ~ 54048020 (-) False LOC110524044
XR_002473527.2 mRNA upstream 28830 54034503 ~ 54048020 (-) True LOC110524044
XM_021603342.2 mRNA upstream 163284 54168957 ~ 54193614 (-) False LOC110524046
XM_036977841.1 mRNA upstream 163284 54168957 ~ 54193614 (-) False LOC110524046
XM_021603344.2 mRNA upstream 165332 54171005 ~ 54191493 (-) False LOC110524046
TU470822 other downstream 109542 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 383584 53617738 ~ 53618864 (-) True G415256
TU470637 other downstream 383689 53617683 ~ 53618759 (-) False G415256
TU467825 other downstream 2389886 51558378 ~ 51612562 (-) True G412613
TU467562 other downstream 2625318 51373465 ~ 51377130 (-) True G412372
TU471641 other upstream 357613 54363286 ~ 54386228 (-) False G416110
TU472396 other upstream 1135642 55141315 ~ 55160267 (-) True LOC110524071
TU473281 other upstream 1603162 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 2703125 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 2704607 56710280 ~ 56711384 (-) True LOC110522975

Expression Profile