RNA id: TU470968


Basic Information

Item Value
RNA id TU470968
length 1503
lncRNA type antisense_over
GC content 0.42
exon number 6
gene id G415552
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54169117 ~ 54175086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTTACCCAGCCAGTTACATGTTCATCCACAAAGACACTCAACAACACACATCCCTTCCTTTTTTTTGTGTAACATTTACTCAAGAACTTTATCATTGATTAAAACCAAGAGAGAAAATTAGACTACAGGATACAGAATGGTTTCTTACTATTGGACCAAAAACCGGTTTAGATTAAAAGACAGTGTAGTGTTTACCTCAAAGGTATTCCGCTAATGTGACATTTCACAGCTAAGACAGTTTTATAGTTTTACTACTTCTCGGGTTGTTTGTCCATGATATGTTGGATGGTCATCACACATGTTAAGTCAGGGGCATGTTAAGTATGATGTCGAACCTTGACAATGAAGGTTTCTATTTGTCGACAGGAAGTAGACATTTACTAGCATCTACTGTATACTCGACACGtactgttgaagtcagaagtttacatacctcagccaaatacatataaactcattttttcacaattcctgacatttaatcctagtaaaaattaggatcagcactttattttaagaatgtgaaatgcatATTGTATGTTTCTCTGCAACGCTCAGAACAGTTCTTTATGTGGCTAAATCAGCTGATGTCTCAGGGGAGTGGATCTTATTGTGTTTCAGTGTTGATGCAGTATCATAGATGGTGTTGTTCATGCTGGAGTAAAAGTATTCATATCTCCCGTAAAGTACCAGGCAAGAGGAAGACTGGGACACTGTTACTGTAGCTCCTTATGACTTGATGACCTCCTGAACTTTTGTTATTTCCTCCTTAAGAACACTTTGCAACTTCTCATAGGCCTCATCCAAGTCGCTGTTGACAATGACAATGTCAAACAATCCAGGCTCGTTGCACTCCTCCATGTCAGTCCGGGCTTCTTCCAGGCGGCTCTGTATTTTCTCCTCTGTCTCCGTTGCTCTACCCCTCAGACGTTCTTCCAGGACCTCAATAGAGGGGGGCTGGATAGAGATGTAGATTGGGTCCAGGTTAGTCTCCTTGATGTGCCTCACTCCTGCGATATCCACGTCCAAGATACAAATGAGGCCCTTGGCCCTCACGTCCTGTACAGCACTCTTACTTGTTCCGTACAGGTTGCCCGAAAACTCATCAGTCTCAATGAATTCTCCCTTGTCAATATCCTCCTGCATAGCCTCCCTGTTTGTGAAGTGGTAATCTGCGGATGAAACAGAAGATAGGACGTCTGCTACGGGCAGTAACATAGCCCCCAGAAGCATAGGCAGACCGAACAGGCCTacggagaagaaaaaaaaggcaTAAACAAAGATGTATATCCCTGTATCTTACAGGGGGATACTTGGGAGAGCCATTGGTGCAGTTCGCTTGGGAGTAAGAAGCATTGGAGCTTCAGTGTCAATAGTAGAGTGGGAGAAGAGGTAGGCACAAAAAGGGCAAAAAGGGTATTGAAAGAGTGGAAGAGtccatttttttatatttttttatttaaccttttatttaacttggcaagtcagttaagaacaaatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470966 lncRNA upstream 87251 54081625 ~ 54081866 (+) True G415550
TU470963 lncRNA upstream 89445 54079469 ~ 54079672 (+) True G415547
TU470959 lncRNA upstream 91213 54077636 ~ 54077904 (+) True G415543
TU470893 lncRNA upstream 150409 54016607 ~ 54018708 (+) True LOC118964527
TU470882 lncRNA upstream 158237 54010591 ~ 54010880 (+) True G415474
TU471195 lncRNA downstream 90977 54266063 ~ 54266343 (+) True G415748
TU471197 lncRNA downstream 133749 54308835 ~ 54312141 (+) True G415750
TU471259 lncRNA downstream 153313 54328399 ~ 54328696 (+) True G415807
TU471264 lncRNA downstream 158731 54333817 ~ 54334053 (+) True G415812
TU471271 lncRNA downstream 169789 54344875 ~ 54345101 (+) True G415819
XM_036979050.1 mRNA upstream 159 54083355 ~ 54168958 (+) True obscna
XM_021603340.2 mRNA upstream 111742 54049039 ~ 54057375 (+) True zgc:153738
XR_002473524.2 mRNA upstream 144613 54019945 ~ 54024504 (+) True LOC110524043
XR_002473521.2 mRNA upstream 144958 54019945 ~ 54024159 (+) False LOC110524043
XR_002473523.2 mRNA upstream 144960 54019945 ~ 54024157 (+) False LOC110524043
XM_021603347.2 mRNA downstream 171395 54346481 ~ 54363715 (+) False mutyh
XM_021603350.2 mRNA downstream 199118 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA downstream 199234 54374320 ~ 54378738 (+) True LOC110524051
XM_021603351.2 mRNA downstream 372427 54547513 ~ 54550162 (+) True dio1
XM_036979051.1 mRNA downstream 377269 54552355 ~ 54554389 (+) True LOC110522872
TU469816 other upstream 1056610 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 1389638 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 1407388 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 2366297 51802250 ~ 51802820 (+) True G412859
TU466916 other upstream 3030733 51130364 ~ 51138384 (+) True camsap2a
TU471018 other downstream 2843 54177929 ~ 54183430 (+) True G415582
TU471260 other downstream 154109 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 154994 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 171450 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 414988 54590074 ~ 54613142 (+) False G415946

Expression Profile