RNA id: TU471018


Basic Information

Item Value
RNA id TU471018
length 2202
RNA type TUCP
GC content 0.41
exon number 2
gene id G415582
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54177929 ~ 54183430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACTTGAGTAAAGTACTCGATAAagctcaaactttcataaaaatacacaaggtactgaattaaagctacactcgttgtgaatctagccaccaagtcagatttgtaaaatgcttttcggcgaaagcatgagaagctattatctgatagcatgcaccccccaaaataccagcacgacacgtaaacaacagattttgcggtagcggcgctacccaaaacgcagaaataaaatataaaacattcattaccttggacgagcttctttgttggcactcctatatgtcccataaacatcacaattgggtctttttcccgattaaatccgtcattgtatacccaaaatgtcattttctGAAGACCAGTCTGATGCTGAGAAaagtccatttacaagacgcaacgtcactttttaaaattacaaaagtcgcctataaacttttacaaatcacttcaaacgacttttctaaaccaactttaggtattaataaacgttaatgatgtatcaaattgatcacggggcgatctgtattcgatagcagcaagtctggaaatcatcgtccattttttcagtttcacaacatactgtgatgcgcctcaagaaaggaggggtctattcgtgttgtaaccaaggataaatgattctgatattgatagcaatggcgacatcgtatggcagctgtaggcgtttacagggggttcgcatatattttctctcgtcttaaacaattcattgaatggcggacgaatattttgtttttgtttttggtaaacagttttaccagggatttttactcctaaacacgttctgttatagccacagacccgatttaaccagttttagaaacttcagagtgttttctatccacacatactatattcctggcatgagtagcaggactttgaaatgttgcgcgatttttaacaaaaagctgcgaaaattcgcatcatccataacaggttttaacactttttggttactgaaAGATTtcataggtgttatttcatagttttgatgtattcactattgttctacaatgtataaaatagtagaaataaagaaaaacccttgaatgagtaggtgtgtccaaatgtttgactggtactgtatatatttgacagTTTGTGGGCAATTTGATATGATAGTTGTTGACAATTAGGCTAAATGTCTTATAAATGTCCTATGAATATAACATGATTAAAAATGACTCAAGAGCCATAAGAGTCTAGTAATATATCTctgatataaactcagcaaaaaaggaccctgtctttcaaagataattcataaaaatcgaaataacttcacagatcttcattgtaaagggtttaaaataCTGTTTCCCTTGCTTGTTCaaagaaccataaacaattaatgaacatgcaccagtggaacggtcgttaagacactaacagcttacagacggtaggcaattaaggtcacagttatgaaaacttaggacactaaagaggcctttctactgaccttgaaaacaccaaaagaagatgcccaggatccctgctcatctgcgtgaacgtgctttaggcatgctgcatggcggcatgaggactgcagatgtggccagagcaataaattgcaatgtccgtactgtgatacgcctaagacagagctacagggagacaggacgggcagctgattgtcctcacagtggcaTACCACGTGTAACAagacctgcacaggatcggtacatccgaacatcacatcagcaggacaggtacagaatggcagcaacaactgcccgagttacaccaggaacgcacaatccctccatcagtgctcagactgtccgcaataggcggACCTGTTGTAATAGGAccagttgtaaggcaggtcctcaccagacatgaggctcatcctgacatgaccctccagcatgacaatgccaccagccatacacCTCGTACTGTGTGTGATTTACTGCAAGACAGgattgtcagtgttctgccatggccagcgcagagcccggatctcaatcccattgagcacgtctgggacctgttagatcggagggtgagggcttgagccattccccctaggaacttgcaggtgccttggtggaagagtggggtaacatctcacaacaagaactggcaaatctggtgcagtccatgaggaggagattgcagtacttaatgcagctggtggccacaccagatactgactgttacttttgaatttgactccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470968 lncRNA upstream 2843 54169117 ~ 54175086 (+) True G415552
TU470966 lncRNA upstream 96063 54081625 ~ 54081866 (+) True G415550
TU470963 lncRNA upstream 98257 54079469 ~ 54079672 (+) True G415547
TU470959 lncRNA upstream 100025 54077636 ~ 54077904 (+) True G415543
TU470893 lncRNA upstream 159221 54016607 ~ 54018708 (+) True LOC118964527
TU471195 lncRNA downstream 82633 54266063 ~ 54266343 (+) True G415748
TU471197 lncRNA downstream 125405 54308835 ~ 54312141 (+) True G415750
TU471259 lncRNA downstream 144969 54328399 ~ 54328696 (+) True G415807
TU471264 lncRNA downstream 150387 54333817 ~ 54334053 (+) True G415812
TU471271 lncRNA downstream 161445 54344875 ~ 54345101 (+) True G415819
XM_036979050.1 mRNA upstream 8971 54083355 ~ 54168958 (+) True obscna
XM_021603340.2 mRNA upstream 120554 54049039 ~ 54057375 (+) True zgc:153738
XR_002473524.2 mRNA upstream 153425 54019945 ~ 54024504 (+) True LOC110524043
XR_002473521.2 mRNA upstream 153770 54019945 ~ 54024159 (+) False LOC110524043
XR_002473523.2 mRNA upstream 153772 54019945 ~ 54024157 (+) False LOC110524043
XM_021603347.2 mRNA downstream 163051 54346481 ~ 54363715 (+) False mutyh
XM_021603350.2 mRNA downstream 190774 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA downstream 190890 54374320 ~ 54378738 (+) True LOC110524051
XM_021603351.2 mRNA downstream 364083 54547513 ~ 54550162 (+) True dio1
XM_036979051.1 mRNA downstream 368925 54552355 ~ 54554389 (+) True LOC110522872
TU469816 other upstream 1065422 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 1398450 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 1416200 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 2375109 51802250 ~ 51802820 (+) True G412859
TU466908 other upstream 3039545 51130364 ~ 51138384 (+) False camsap2a
TU471260 other downstream 145765 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 146650 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 163106 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 406644 54590074 ~ 54613142 (+) False G415946
TU471449 other downstream 406644 54590074 ~ 54613142 (+) False G415946

Expression Profile