RNA id: TU471195



Basic Information


Item Value
RNA id TU471195
length 281
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G415748
representative True

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54266063 ~ 54266343 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctatacagtgccttgcgaaagtattcggcccccttgaactttgtgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaagtgggacacaatcatgaagtggaacgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcgtgccaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctctgaatgatccaatgt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU470968 lncRNA upstream 90977 54169117 ~ 54175086 (+) True G415552
TU470966 lncRNA upstream 184197 54081625 ~ 54081866 (+) True G415550
TU470963 lncRNA upstream 186391 54079469 ~ 54079672 (+) True G415547
TU470959 lncRNA upstream 188159 54077636 ~ 54077904 (+) True G415543
TU470893 lncRNA upstream 247355 54016607 ~ 54018708 (+) True LOC118964527
TU471197 lncRNA downstream 42492 54308835 ~ 54312141 (+) True G415750
TU471259 lncRNA downstream 62056 54328399 ~ 54328696 (+) True G415807
TU471264 lncRNA downstream 67474 54333817 ~ 54334053 (+) True G415812
TU471271 lncRNA downstream 78532 54344875 ~ 54345101 (+) True G415819
TU471275 lncRNA downstream 89492 54355835 ~ 54370554 (+) False mutyh
XM_036979050.1 mRNA upstream 97105 54083355 ~ 54168958 (+) True obscna
XM_021603340.2 mRNA upstream 208688 54049039 ~ 54057375 (+) True zgc:153738
XR_002473524.2 mRNA upstream 241559 54019945 ~ 54024504 (+) True LOC110524043
XR_002473521.2 mRNA upstream 241904 54019945 ~ 54024159 (+) False LOC110524043
XR_002473523.2 mRNA upstream 241906 54019945 ~ 54024157 (+) False LOC110524043
XM_021603347.2 mRNA downstream 80138 54346481 ~ 54363715 (+) False mutyh
XM_021603350.2 mRNA downstream 107861 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA downstream 107977 54374320 ~ 54378738 (+) True LOC110524051
XM_021603351.2 mRNA downstream 281170 54547513 ~ 54550162 (+) True dio1
XM_036979051.1 mRNA downstream 286012 54552355 ~ 54554389 (+) True LOC110522872
TU471018 other upstream 82633 54177929 ~ 54183430 (+) True G415582
TU469816 other upstream 1153556 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 1486584 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 1504334 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 2463243 51802250 ~ 51802820 (+) True G412859
TU471260 other downstream 62852 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 63737 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 80193 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 323731 54590074 ~ 54613142 (+) False G415946
TU471449 other downstream 323731 54590074 ~ 54613142 (+) False G415946

Expression Profile