RNA id: TU471197


Basic Information

Item Value
RNA id TU471197
length 3280
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G415750
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54308835 ~ 54312141 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acgacatttattggatatttcaaacttttttaacaaatcaaaaactgaaaaattgggcttatTAGACGTATTAACTTCACTAAAACTTTTATTAAAAACAACCATAATAGAAAGTTATTTGTCGTGAACATATGATCATGACCCCCATTTTTCAAAGTAACATTAAACAGACATTAGAACGATCAGACCCTGTTTTAAGCCCCGcatttgtttttttggggggggtcttgcctgttttgcatgttattttggcattaatacacgtcacatatcagtttgcaaacaatttaaaaaatatatatataaatataattgagttaataaagctgcatacaaacatggtttcttttttgttttcttgagtaaggcagctccaaaaagcaggtgtttcagcctagctcagtgctttctgtggtggtggggcaagacagcagaaaatacggagcgttgcaccatgattggctcagtgttctgtcactcatggggacactatgttacattagaagtgcccatacAAGAAGGATCAATGTCATTGGCCACCCATAAAATTACATCAATTCAcagtatatgtacagtagctttgattggactgctttcaaaatcttagctataGCAGTCATCaccatgaatcaagtcgacaatctactgtcaactctttttaatccttgtcatatgaagagaaataatgaagagaaattatagataaaatgtatcagtgctcatcggccattggatataaacattacacaactagtttgaatcagtgacagtggctgtgtggtcccaaatctgggataAAGGGGCTCTTTTCCACGTTTAAAAtgaaaacattcaacattggccatgctgtcaatgaagcatgatttatGCTGCGCTCAAAACAACCGTTAACTTGGAACTGCGAAAACATGACTTTtttgagttcaagacaactgggaaatacggaaaaaaacgagctccgactgggaaatacgttttgaacggactctggcctctttctagagctacgacctgaagatcaccgaagtcatcatgattcaaccagttcccagttgtcttgaaagcaccataaagaGACTTTGATCACAAAAGTCCACAAAGGACCACCGTGCCACCTTCCTgatcaagtgagcacagcacaacaaggtgagtccaaaaatgtattgtatgctgctgcataaatgatgtaatatgccagggagatatgtatactgtatctaagaaagtaatactaagtgtatgttgtgtagtaagctgttagtagcccatgtgcctcacccgtGCTGCTACATTgcttgcagtttggggttttaggctgggtttctgtatagcactttgtgacatcagctgatgtaaaaagggctttttaatacatttgattgattgatcatttggtctatttacccctcttaatttcgcctactgttctgacttggtgatgcacatgtagcctataacctgttttagagaaatgtaatcatcaaattttggaagagctttcattgtctgcttaaatGCCCCCTTTTTTTTATCCTACGcttgacttggtgtacagggagaacactgtaaaaacggcccatgttctgaattctgtcgctgtacatctcaaaagtgctaaacaaatagttatgactatatccgtcctagctcgctcattaacgtcttaatcgaaattatggattgcctcttatcctccCCTTattccatagtttgtacatctcaattgtcagtagaaactacatttgtttaagcaagtcagccatttcaggcggaattaactgtttcgctgccagacaaagacgctgatagccaggtgttgcagtggtaaggtgttgggactgctgttgggagtTGACCCTAAGTTGACCCTAACAGTTTGCGGGCACTgcttgtcaccgttatagtgcaattaatgtattgtttagtgttgtggctttgctggcatgcatcccatttatttgtttttttgccacaccaagatttacatgctaaaatagcCACTGAGAATGATAATGCAGTGTTGCCTGGAAGTGACATTCAGAAGATATTGGATGGGTTAAACAAAACACTTAGGATTACATACATTGACGTTGCTAAAATTGCTTTGTTAAACTTGGATAATTGAAAAAGAACTACTAACTACCAAGTGATCTTCGTTCACTTTATCTCCTCATATTCCTGTCCCTCTACTTCCTGCTAATTCTCCTTGATCTCAGTGGTGTACACAGGCTGAACCACCACACGGTAGGAGAACTGGTCTGAGTGGCACGGATAGGCCTGGCCCGCAGAGATGTTTGCTGGAATCTGGGCCTGATTTCCGCCATTGCCAATCGTGGATGCAAAATCCTGGACATGGAATACAAACTCCCCTTCACACATCAGGACAACCTTGTTGAGGTAGCGGATGCTGTCCTGATACTCTTGGGGCAACTCCCTGTTATTCTGGGCAGTTAGCGAGACCATCGGCAGCGACGGACAGCGGATGCCGCTGTTTGAGCATTCATGGTTGTGGATAAAGACCCTGGTGTTCCAGTTGAGCTTTTTGAACAGGGAAAAAAAGGCACTGTTGTGCACAGGGCTGTCAAAGTTGGCACTGAGGCTGTTGAGGTTCTGGCCTGAGTGGTAATAGTGTCCGACGTATCGGAACGTGTTGAGCTCCTTTGAGCTGAAAGTGAAGCTCCATGGCTTGCCAGTGTAGATCCTGGGTGTGTATTCCACCTTTTTAAGGAGGAGGCCCCCAGCTAGCGTCTGGAAGGGTAGTGCATTGAACTGAAAGCCCTGCAACATGCCGGCATTATAACGCTCTTGTTGGTCCATGTACAGTTCAGACTTGGCTTTGAGGTTGAACAAATCTTCAGCAGCGATCATGGGGAAACGGATGTGGTTCAAAATGGCGACCTGGTCTTCATGGGTGGACAAGTTACCCTGTTCCAACACCCAGTCCTCCAAACCCTTTAGGAGGAAGGCCTCATCTGGCACTACCACGTCTGAACGGGCTAGAAGGGCCTTTACTGTGCCCAGGGCAAGACCAGTCCAGGCTGGGGAACGGATCAGTGACTCACAGTTCCAGGCAAGGTAGCGCAGACATGTTTCCTGCAGAACTGTGTCGCCTGTGTGGACTGAGTACTCGTACAGAGAGGtctgggtctggaaggaggcatCATCGGGGAGCAGCCAGGTGAAAAGCCTCCCTGCCGCCTCCTGAAGCTGCTTCAGACCCCAGTCGGACGCCATCTTGTGGATGCACTGGGCAGAGGACATGGTCACGTTAATCTGCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471195 lncRNA upstream 42492 54266063 ~ 54266343 (+) True G415748
TU470968 lncRNA upstream 133749 54169117 ~ 54175086 (+) True G415552
TU470966 lncRNA upstream 226969 54081625 ~ 54081866 (+) True G415550
TU470963 lncRNA upstream 229163 54079469 ~ 54079672 (+) True G415547
TU470959 lncRNA upstream 230931 54077636 ~ 54077904 (+) True G415543
TU471259 lncRNA downstream 16258 54328399 ~ 54328696 (+) True G415807
TU471264 lncRNA downstream 21676 54333817 ~ 54334053 (+) True G415812
TU471271 lncRNA downstream 32734 54344875 ~ 54345101 (+) True G415819
TU471275 lncRNA downstream 43694 54355835 ~ 54370554 (+) False mutyh
TU471273 lncRNA downstream 51508 54363649 ~ 54395448 (+) True mutyh
XM_036979050.1 mRNA upstream 139877 54083355 ~ 54168958 (+) True obscna
XM_021603340.2 mRNA upstream 251460 54049039 ~ 54057375 (+) True zgc:153738
XR_002473524.2 mRNA upstream 284331 54019945 ~ 54024504 (+) True LOC110524043
XR_002473521.2 mRNA upstream 284676 54019945 ~ 54024159 (+) False LOC110524043
XR_002473523.2 mRNA upstream 284678 54019945 ~ 54024157 (+) False LOC110524043
XM_021603347.2 mRNA downstream 34340 54346481 ~ 54363715 (+) False mutyh
XM_021603350.2 mRNA downstream 62063 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA downstream 62179 54374320 ~ 54378738 (+) True LOC110524051
XM_021603351.2 mRNA downstream 235372 54547513 ~ 54550162 (+) True dio1
XM_036979051.1 mRNA downstream 240214 54552355 ~ 54554389 (+) True LOC110522872
TU471018 other upstream 125405 54177929 ~ 54183430 (+) True G415582
TU469816 other upstream 1196328 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 1529356 52778517 ~ 52779479 (+) True G414041
TU469325 other upstream 1547106 52761389 ~ 52761729 (+) True G414007
TU468094 other upstream 2506015 51802250 ~ 51802820 (+) True G412859
TU471260 other downstream 17054 54329195 ~ 54329780 (+) True G415808
TU471261 other downstream 17939 54330080 ~ 54330480 (+) True G415809
TU471274 other downstream 34395 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 277933 54590074 ~ 54613142 (+) False G415946
TU471449 other downstream 277933 54590074 ~ 54613142 (+) False G415946

Expression Profile