RNA id: TU471264


Basic Information

Item Value
RNA id TU471264
length 237
lncRNA type inter_gene
GC content 0.64
exon number 1
gene id G415812
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54333817 ~ 54334053 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgtgttggggtaccagccggtcctggcaccatggcatccgggccagaccgaggctcctgcggtggaggaatgggtacagcgctccaaggagacctggagggccgtccaggaatctctacaacaagcgagtggacggcagaagaggagtgctgaccgccaccgcagtgaggcccccgtatttgtaccgggggacagggtctggctctcgacccgaaacctacctctccgcttgcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471259 lncRNA upstream 5121 54328399 ~ 54328696 (+) True G415807
TU471197 lncRNA upstream 21676 54308835 ~ 54312141 (+) True G415750
TU471195 lncRNA upstream 67474 54266063 ~ 54266343 (+) True G415748
TU470968 lncRNA upstream 158731 54169117 ~ 54175086 (+) True G415552
TU470966 lncRNA upstream 251951 54081625 ~ 54081866 (+) True G415550
TU471271 lncRNA downstream 10822 54344875 ~ 54345101 (+) True G415819
TU471275 lncRNA downstream 21782 54355835 ~ 54370554 (+) False mutyh
TU471273 lncRNA downstream 29596 54363649 ~ 54395448 (+) True mutyh
TU471349 lncRNA downstream 124177 54458230 ~ 54493001 (+) False G415886
TU471353 lncRNA downstream 124177 54458230 ~ 54462509 (+) False G415886
XM_036979050.1 mRNA upstream 164859 54083355 ~ 54168958 (+) True obscna
XM_021603340.2 mRNA upstream 276442 54049039 ~ 54057375 (+) True zgc:153738
XR_002473524.2 mRNA upstream 309313 54019945 ~ 54024504 (+) True LOC110524043
XR_002473521.2 mRNA upstream 309658 54019945 ~ 54024159 (+) False LOC110524043
XR_002473523.2 mRNA upstream 309660 54019945 ~ 54024157 (+) False LOC110524043
XM_021603347.2 mRNA downstream 12428 54346481 ~ 54363715 (+) False mutyh
XM_021603350.2 mRNA downstream 40151 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA downstream 40267 54374320 ~ 54378738 (+) True LOC110524051
XM_021603351.2 mRNA downstream 213460 54547513 ~ 54550162 (+) True dio1
XM_036979051.1 mRNA downstream 218302 54552355 ~ 54554389 (+) True LOC110522872
TU471261 other upstream 3337 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 4037 54329195 ~ 54329780 (+) True G415808
TU471018 other upstream 150387 54177929 ~ 54183430 (+) True G415582
TU469816 other upstream 1221310 53112183 ~ 53112507 (+) True G414488
TU469359 other upstream 1554338 52778517 ~ 52779479 (+) True G414041
TU471274 other downstream 12483 54346536 ~ 54350615 (+) False mutyh
TU471439 other downstream 256021 54590074 ~ 54613142 (+) False G415946
TU471449 other downstream 256021 54590074 ~ 54613142 (+) False G415946
TU472519 other downstream 990592 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 2283837 56617890 ~ 56628617 (+) True G418077

Expression Profile