RNA id: TU471349


Basic Information

Item Value
RNA id TU471349
length 1964
lncRNA type intronic
GC content 0.40
exon number 5
gene id G415886
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54458230 ~ 54496389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactgcattaccctgcatggtgtaatgactagtcaaacatctccaaactctgtgtatagtctgttgcCCAATCACTGTTTTCCCCTGCATGTTGTAATGCATAGTCAAAAATCtcacaactctgtgtaaagtctgttgtccaaacaCTACATTCCACTGCAAGGTGTAATGACTAGACAAACAtctccaaacactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacaactctgtgtaaagtctgttgtccaaacactgcattcccctgcaaggtgtaatgactagacaaacatctccaaaaactgcattcccctgcaaaagtgtaatgactagacaaacatctccaaactctgtgcATAGTCTGTTGCACAATCACTGTTTTCCCATGCATGTTGTAATGAATAGTCAAAAATCTCACAACTCTGTGtgaagtctgttgtccaatcaatgcattcccctgcatggtgtaatgactagtcaaacatctccaaactctgtaTTAAGTTTGttgtccaaacactgcattcccctgcatggtgtaatgaatattcaaacatttccaaactctgtgtaaaatCTGTTGTCCAATCACAGCATTCACCACATGGTGTAATGACTCATCAAACATGTCCAAACTCTGTGtgaagtctgttgtccaatcactgtattcccctgcactgtgtaaagactagtcaaaaatctcaaaactctgtgtaaagtctgttgtccaatcactgcattcccctgcatggtgtaatgactaTTCAAACatctccaaactctgtgtatagtctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgtaaagtctgttgtccaatcactgcattcccttgcATAGTGTAATGAATAGCCAAACATCTCAAAATGCTGTgttaagtctgttgtccaatcactgcattcccctgcactgtgtaaagactagtcaaaaatctcacaaCTCTGTGTAAAGCCTGTTGTCCAatgactgcattcccctgcatgatgTAATGACTATTCAAACATCTAcaaactctgtgtatagtctgttgcCCAATCACTGTTTTCCCCTGCATGTTGTAATGAAAATTCAAAAATCtcacaactctgtgtaaagtctattGTCATAACACTGGATTCCACTGCAAGGTGTAATGACTAGACAAACAtctccaaacactgcattcccctgcaaggtgtaatgactagacaaacatatccaaactctgtgtaaattctgttgtccaatcactgcattcccttgcatggtgtaatgaatattcaaacatctccaaaaactgcattcccctgcaaggtgtaatgactagacaaacatatccaaactctgtgtaaattctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgtaaagtctgttgtccaatcactgcattcccctgcatggtgtaatgaatattcaaacatttccaaactctgtgtaaagtctgctgtccattcactgcattcccctgtactgtataaagactagtcaaaaatctcccaactctgtgtaaagtctgttgtccaatcacctcattcaccgcatggtgtaatgaatagccaaacattttcaaactctgtgtatagtctgttgcctaatcactgcattcccctgcatgttgtaatgaatagtcaaaaatctcacagctctgtgttaagtttgttgtccaaacactgcattcccctgcatggtgtaatgaatattcaaacatctccaaactctgtgtaaagtctgttgtccaatcacctcattcaccgcatggtgtaatgaatagccaaacattttcaaactctgtgtatagtctgttgtccaaacactgcattcccctgcaaggtgtaatgactagacaaacatctccaaactc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471273 lncRNA upstream 62782 54363649 ~ 54395448 (+) True mutyh
TU471275 lncRNA upstream 87676 54355835 ~ 54370554 (+) False mutyh
TU471271 lncRNA upstream 113129 54344875 ~ 54345101 (+) True G415819
TU471264 lncRNA upstream 124177 54333817 ~ 54334053 (+) True G415812
TU471259 lncRNA upstream 129534 54328399 ~ 54328696 (+) True G415807
TU471355 lncRNA downstream 1691 54494692 ~ 54496389 (+) True G415886
TU471365 lncRNA downstream 10034 54503035 ~ 54513549 (+) False G415887
TU471367 lncRNA downstream 12554 54505555 ~ 54513549 (+) True G415887
TU471401 lncRNA downstream 62075 54555076 ~ 54556336 (+) True G415914
TU471438 lncRNA downstream 97073 54590074 ~ 54613142 (+) False G415946
XM_021603350.2 mRNA upstream 79492 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA upstream 79492 54374320 ~ 54378738 (+) True LOC110524051
XM_021603347.2 mRNA upstream 94515 54346481 ~ 54363715 (+) False mutyh
XM_036979050.1 mRNA upstream 289272 54083355 ~ 54168958 (+) True obscna
XM_021603340.2 mRNA upstream 400855 54049039 ~ 54057375 (+) True zgc:153738
XM_021603351.2 mRNA downstream 54512 54547513 ~ 54550162 (+) True dio1
XM_036979051.1 mRNA downstream 59354 54552355 ~ 54554389 (+) True LOC110522872
XM_036977854.1 mRNA downstream 96957 54589958 ~ 54595332 (+) True LOC118964620
XM_036977852.1 mRNA downstream 102496 54595497 ~ 54613143 (+) True LOC110524055
XM_021603358.2 mRNA downstream 124523 54617524 ~ 54620337 (+) True fpgt
TU471274 other upstream 107615 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 127750 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 128450 54329195 ~ 54329780 (+) True G415808
TU471018 other upstream 274800 54177929 ~ 54183430 (+) True G415582
TU469816 other upstream 1345723 53112183 ~ 53112507 (+) True G414488
TU471439 other downstream 97073 54590074 ~ 54613142 (+) False G415946
TU471449 other downstream 97073 54590074 ~ 54613142 (+) False G415946
TU472519 other downstream 831644 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 2124889 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 2233184 56726185 ~ 56729821 (+) True G418119

Expression Profile