RNA id: TU471367


Basic Information

Item Value
RNA id TU471367
length 2359
lncRNA type intronic
GC content 0.39
exon number 3
gene id G415887
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54503035 ~ 54513549 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcccctgcatggtgaaATGACTAGTCTGAAATCTCCAAACTAtatgtaaagtctgttgtccaataacTGCATTCCCCAGCATGGTGTAATGACTAGTCAAAAATCTCCAAACTATTtttaaagtctgttgtccaattaCTGCAAtcccctgcactgtgtaaagactagtcaaaaatctcccaactctgtgtaaagtttgtTTGGTGATTCACTACATTCACTACATTCCACTGCATAGTGTAATGAATAGTCAATCATCTCAAAACGCTGTgttaagtctgttgtccaatcactgcattcccctgcatggtgtaatgacaAGACAAAAATcaccaaactctgtgtaaagtctgttgtccaataactgcattcccctgcatggtgtaatgacgAGACACAAATCTCCAAACCATATGTAAactctgttgtccaatcacctcattcacggcatggtgtaatgaatattcaaacatttccaaactctgtgtgAAATCTGTTGTACATTCACTGCATTCCCATACATGGCGTAATGGCtagtcaaacatctccaaactctgtgtaaagtctgttgtccaataactgcattcccctgcatggtgtgATGACTAGTCAAACATGTCCAAACTCTGTTTAAagcctgttgtccaatcactgcattccatTGCATGGTGTAGTGAATATTCAATAATCTAAAAACACTGGgttaagtctgttgtccaatcacctcATTCAACGCAAGGTGTAATGAATAGtcaaacattttcaaactctgAGTAAAGTTTATTGTcacatcactgcattcccctgcatggtgtaatgactaGTCAAAAATAGACAAACTCTTTGTAAAGTTTGTTGTCCAAAAaatgcattcccctgcatggtgtaatgaatattcaaaaatagacaaactctgtgtaaagtctgttgtccaatcactgcattcccctgcatgatgTAATGAATAGTCAGAAATCTCCAAACTCTGTATAAAGTCTGCTGTCCAATCAATGtattcccctgcatggtgtaatgaatattcaaacaattacaaactctgtgtaaagtctgttgtccaataacTGCATTAACCAGCAAGGTGTAAAGACTAGTCAAACATCTCCAagctctgtgtaaagtctgttgtccaatcactgcattcccctgcatagtGTAATGAATAGTCAATTATCTCAGAATGCTTTGTTAaatctgttgtccaatcactgcattcccctgtaTGGTGAAATGACTAGTCGAAAATAGACAAACTCTGTGTAAAATCTgctgtccaatcactgcattcccatGCAAGGTGTAAAATTAGTAAAAAATCAagaactctgtgtaaagtctgttgtccaatcactgcaatcccctgcactgtgtaaagactagtcaaaaatctcccaactctgtgtaaagtttgttgtccaatcacctcattcacggcatggtgtaatgaatagtcaaacattttaaaactctgtgaaaagtctgttgtccaatcactgcgttcacctgcatgttgtaatgaaaagtcaaaaatctcacaactctgtgtaaagtctgttgtccaatcactgcattacACTGCATGGTGTCGTGACTcatcaaacatttccaaactctgaggaaagtctgttgtccaataacTGCATTCCCATGCAAGGTGTCATGAATAGTCAAAAATCTcaaaactctgtgtaaagtctgttgtccaattaCTGCGTTCCCATGCATGGTGTCATGAATAGTCAAAAATCTcaaaactctgtgtaaagtctgttgtccaatcactgcattcccctgcatggtgtaatgactaTTCAAAAATAGACAAacactgtgtaaagtctgttgtccaatgactacattcccctgcatggtgtaatgacaAGACAAAAATCTCAAAACTCTgagtaaagtctgttgtccaatcactgcattcccctgtaTGGTGAAATGACTAGTCTAAAATCTCCAAACTAtatgtaaagtctgttgtccaatcactgcattccccagCACTGTGTAAAGACTAGTCAAAAATCTCCAAACTATTTTTAAAGTCTCTTGTCCAATCACTGCAAtcccctgcactgtgtaaagactagtcaaaaatctcccaactctgtgtaaagtctgttgtccaatcactgcattcccctgcatggtgtaatgacaAGACAAAAATcaccaaactctgtgtaaagtctgttgtccaataactgcattcccctgcatggtgtaatgacgAGACACAAACCTCCAAACGATATGTAAactctgttgtccaatcacctcattcacggcatggtgtaatgaatagtcaaacattttcaaactctgtgtAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471355 lncRNA upstream 9166 54494692 ~ 54496389 (+) True G415886
TU471357 lncRNA upstream 10206 54492179 ~ 54495349 (+) False G415886
TU471349 lncRNA upstream 12554 54458230 ~ 54493001 (+) False G415886
TU471401 lncRNA downstream 41527 54555076 ~ 54556336 (+) True G415914
TU471438 lncRNA downstream 76525 54590074 ~ 54613142 (+) False G415946
TU471452 lncRNA downstream 76525 54590074 ~ 54613142 (+) False G415946
TU471454 lncRNA downstream 97192 54610741 ~ 54613142 (+) True G415946
TU471519 lncRNA downstream 175033 54688582 ~ 54688882 (+) True G416005
XM_021603350.2 mRNA upstream 126817 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA upstream 126817 54374320 ~ 54378738 (+) True LOC110524051
XM_021603347.2 mRNA upstream 141840 54346481 ~ 54363715 (+) False mutyh
XM_036979050.1 mRNA upstream 336597 54083355 ~ 54168958 (+) True obscna
XM_021603340.2 mRNA upstream 448180 54049039 ~ 54057375 (+) True zgc:153738
XM_021603351.2 mRNA downstream 33964 54547513 ~ 54550162 (+) True dio1
XM_036979051.1 mRNA downstream 38806 54552355 ~ 54554389 (+) True LOC110522872
XM_036977854.1 mRNA downstream 76409 54589958 ~ 54595332 (+) True LOC118964620
XM_036977852.1 mRNA downstream 81948 54595497 ~ 54613143 (+) True LOC110524055
XM_021603358.2 mRNA downstream 103975 54617524 ~ 54620337 (+) True fpgt
TU471274 other upstream 154940 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 175075 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 175775 54329195 ~ 54329780 (+) True G415808
TU471018 other upstream 322125 54177929 ~ 54183430 (+) True G415582
TU469816 other upstream 1393048 53112183 ~ 53112507 (+) True G414488
TU471439 other downstream 76525 54590074 ~ 54613142 (+) False G415946
TU471449 other downstream 76525 54590074 ~ 54613142 (+) False G415946
TU472519 other downstream 811096 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 2104341 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 2212636 56726185 ~ 56729821 (+) True G418119

Expression Profile