RNA id: TU471439


Basic Information

Item Value
RNA id TU471439
length 2420
RNA type TUCP
GC content 0.45
exon number 8
gene id G415946
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54590074 ~ 54613142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGgaatgggcagagagggggtGGTGTCTGGTGTGCGAACTTTTCTCGGTGAGACTGCCTCTACGTACGTTTTGTTGTGCACATTCATTCAAGCAAATGTGACCGGATCGTCTGCATATCATTTCagtttggCTGAAAGACACGCAGGGTCTCCCTGTATTACCAACTCTGTTGATGACGTCCACTTTGACCACACTATAGGAGTCGGACAGGTTGTCAACATCAAAGCAAAAGTCAACGGAGCCTTCACATCCAGTATGAAGTATGgaggtaggtaggtgtgtgtgcagAGGCCTATCAGGGTGCATTGCGGCACATCAACGTCGCCTTTATGACCTTTTGAGGTGCTGGACAAAGGCAGAAAGCCACGCACGTTGCCCCAGATACGACCCAAACTGGTGGATGGGGAAAGACACTACAAGAAGGCTATCGCTAGGAAGAAAATCCGACTGGacagGAagtacattatatattattatcTCCTGCAATCAAACGGAGGTGCCTCTGTCTGTACCCTGGGACATCAGCAACCAGGTAAgacaaagcacacacacatatacacacacacttacacggaAGAATCCAAACCGGTTTCTTTCTCAGCTGTATCTCAGCTACAACAATGTGTCTGCACTGAAAATAATGGCTGCTCCATGCAACTGAATGTTGAGCTCTGAGGAAAAACAAGGTACGTCTCGTTTGTGGAACAGTTAACCATAAAGGCATCAATCGTTAGAAACGTTATTCAACTAAATTAGAATAAGCTCATAGGATTGTTTGTTTCCTGctaactctcccctctcctccctaccggCTAATCCAATTATGACTTTCGATGGCCAGCTGAAAATGCACAGTCATAGTGAGTGTTTTCGAATTcagattaggttggatggaagcaatgtggaacaagtcaactGTGTTCTTAAAGGAGCTACGTATAACATTTCCACTTGCACTAAATGTCAATGATTTAATGATCTAGCAGTATATGAATAGAACTATAGTAATTTCCATGGTTTAACCCCCTCCTTCCTGATCTGTTCCCAGGTCAGTCTGCACACTCTGGAGAACCAAATGCTTTGTTTTAAGGTAGAGACTCATGTCAACGTCCCCGCTGAACAGGCCTTCCATCTGCTCTCAGACCTGCGCAGGAGACATGAGTGGGACAGGCATTACCCGGACCCATACCTGATTGCCCTGCCACTAAGGAATACACCCAGGGAGAAGTTCTCTGTGCAGGCTTCAGTATCTGCGAGGAGTCCGACTCAGAATCTCCTACTACAACCAGGCCACACCGGGAGTCCTCCATTATATCTCCAACGACATCGCAGGCCTTTCTTCCACCTTTCACTCCTGCAGCAAGTACcgagaggagaacagagacagCCTAGCCACCCTGCCCCTTCTGACCTGTGACGAAATGGTATCATCCTGATCCCCTCTGTCCTGTCACACATGGTACAGTCCTGGAAGCGCTGCCCCTTTGACCTATGATAGAATGATACCATTCTCCTGGCCGCCTTGCACCACTCTGCCCTGTGAAAGATGGTATCACCCAGCACCCTTCTGCCTTGTTACTGAATGACACCGTCCTGCTGCCCTGCACCCCTACCAATATGTGCACTTGGAAAGGACCAGGATAGCTAGTTCCCTTTTCACCCATTCTGTACTGAGGAACAGCCTAACTCTTATCATTGGGAGACCTGAGAACGCCAGTTCTGGGATATTCCCCGACCCCAACTGCCAAGGAAATCTGTACTTTTGCATTTCTAAAATGTGGGATTTTCAAATGTGGGACTAGTTTTGTGATTACTAATGTTTGTTACTCTCTTTGATGTTACATCATGATCTTccagaccagagtacatttccACACTACAGGTTACTCTTATCTCTCAAGACTGTCAGCTGGTGAACGTCCATTTGTATAATATTATATCAAACTCATCTTTTGATATTACGTGCAATACTTAAGACCTAACTAAACACAAGTATTGTTATTATCTGGACATTAAACAGTTAGTAGCCCTATGAACAGGAGAAGTATGCAAACTGGTTTGCTATGCAGTTGAGTCTGACATGTTTGTacatgtttttgtcttgtctcttGCTACCGAACTGTGGATAAAAAAGCAGACTAGTTCAAGTAGGAGTATTTACATGCAATTTGTTTTACAATAGGCTATTTTCTACCTCCTTAAATCACATTCTTAATCCACCATTTGCCTTTTGAATCATGTAGTCGAGATATACATCTACTGTATTTGTGATTTTGATTTGGGAGACTAGTGCGCTGTCTAATCTCAGAATGAGCCAAATACACTTTACTTCACAACAGGTATTTCAACATGAGTTGACGCCACGAGGTGAATAAATAGTCATGATTTCACTCGAACAATAAACACAATAGACCAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471401 lncRNA upstream 33738 54555076 ~ 54556336 (+) True G415914
TU471365 lncRNA upstream 76525 54503035 ~ 54513549 (+) False G415887
TU471367 lncRNA upstream 76525 54505555 ~ 54513549 (+) True G415887
TU471355 lncRNA upstream 93685 54494692 ~ 54496389 (+) True G415886
TU471357 lncRNA upstream 94725 54492179 ~ 54495349 (+) False G415886
TU471519 lncRNA downstream 75440 54688582 ~ 54688882 (+) True G416005
TU471947 lncRNA downstream 222471 54835613 ~ 54837792 (+) True G416362
TU471955 lncRNA downstream 226220 54839362 ~ 54839580 (+) True G416367
TU471965 lncRNA downstream 245888 54859030 ~ 54859350 (+) True G416377
TU471966 lncRNA downstream 246299 54859441 ~ 54859821 (+) True G416378
XM_036979051.1 mRNA upstream 35685 54552355 ~ 54554389 (+) True LOC110522872
XM_021603351.2 mRNA upstream 39912 54547513 ~ 54550162 (+) True dio1
XM_021603350.2 mRNA upstream 211336 54374204 ~ 54378738 (+) False LOC110524051
XM_036977847.1 mRNA upstream 211336 54374320 ~ 54378738 (+) True LOC110524051
XM_021603347.2 mRNA upstream 226359 54346481 ~ 54363715 (+) False mutyh
XM_021603358.2 mRNA downstream 4382 54617524 ~ 54620337 (+) True fpgt
LOC118964715 mRNA downstream 10548 54623690 ~ 54636937 (+) True LOC118964715
XM_021603360.2 mRNA downstream 88970 54702112 ~ 54716209 (+) False LOC110524059
XM_021603362.2 mRNA downstream 88970 54702112 ~ 54716209 (+) False LOC110524059
XM_021603361.2 mRNA downstream 89731 54702873 ~ 54716209 (+) True LOC110524059
TU471274 other upstream 239459 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 259594 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 260294 54329195 ~ 54329780 (+) True G415808
TU471018 other upstream 406644 54177929 ~ 54183430 (+) True G415582
TU469816 other upstream 1477567 53112183 ~ 53112507 (+) True G414488
TU472519 other downstream 711503 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 2004748 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 2113043 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 2310782 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 2330696 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile