RNA id: TU471997


Basic Information

Item Value
RNA id TU471997
length 1435
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G416409
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54832468 ~ 54833938 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agacatggtggtgtAGTATGAAGATCTGAATTCCAcaaaccaagaggttgtgagttcaaatcccaggtgaggacatgttgaataacaATCAATGTATAAATTAAAAAGCACAATTTAATCATGTGTGTTAAAAGCACAGTTTGTGTGTGTAACCAGTTGCACAGCCTTTTTTTAGTTAAGATGCCCAAATAATATTTTATAGTAGAATGAACACAAGTTGAGCAAACACATCAAGTTTTTTCAAGTTCGAGCTAAGTTTGTGCCAACTATTTTGAGGAGCAGCTACCCACTTCTGCTTCTCCAGCAACTGCAGtccctttgatattttaagtaagaattgtgcaccaatattttttaaaagcctgttatattaatctaaaatatatttaatatagaccATATGGATaattcaataaatcagattttttatgacacttgctaaagtgccaaaattcagcattttgacatttCCCTCCTTCAGCCCTGTGTCACTTCTAAGAAGATGTTCACCCACTTAATCCCAACATTTCTCAAAGTATCACCATCATTGTGAAgcctttgtcaaagcaacaaaataactaagtcatttctgaagatgattatttatttcatgtgattagtgattaatttacATCTGTCCATCATTTGAAGGTCAAGACGTTACGTGAACAGAAGTCTCATTTAATAGTCAAATcctagtgtaaaagcaggtgagctggttccaCTCTTTTTTGCCAcgttctggtgttttgtggtggaaatctgagcgggtcgagcataacatgtcaaccctgttacccatagatacaATTTTTATCATATTTTTGTGAAGCTTACATTCAATTGCCACCCTCTGTTGCACACAGcgagcttccattccccctgtcacaaggggatttatggctgatttaagatttttttttttatttaacctgctgagatgaagttgaacatgtgttCTTTATgtcagaatgttaaaattaggttaAATCCaacatatatgtattttttttaaccaaattACACTTCTCAAAGGGCACtgaattggtggaatgaccctTGTACTTTTCCACTCCTCCCACACACTCCCATAAGGGACACTCCCATAAGGGAGCCAAGGAGAGGATGAGGAAAATCAGCATGTTGGAgtccaaacacacagtcacatctTCCCCAGGTCCTGGGGACCTTTCTGTCTATGTCTGGTATCAAGAGCCATCTGAAGCAGGTGTGAGTGAGCTGTTTCCATTGAGAGTAGAGGACGGGGTCCAGTCTGGCTGGTAGAAGTGGATGTCGAACATCCGAGCCCAGTTGGCGAACACTGTCTTCTCTGTGATGAAGCGATGGTGGCTTCCACGCCGGTTCCGCTCGTGGGAGAGATACATGGCGCACTCGTCAGGCCCCGAAGGCTCGTAGTAATGATACGGCACCGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471826 lncRNA downstream 167841 54656773 ~ 54664627 (-) True G416253
TU471719 lncRNA downstream 337104 54458229 ~ 54495364 (-) False G416166
TU471707 lncRNA downstream 369952 54460802 ~ 54462516 (-) True G416166
TU471655 lncRNA downstream 451374 54377683 ~ 54381094 (-) False G416123
TU471996 lncRNA upstream 1278 54835216 ~ 54836716 (-) True G416408
TU472005 lncRNA upstream 12146 54846084 ~ 54846546 (-) True G416417
TU472006 lncRNA upstream 13420 54847358 ~ 54849988 (-) True G416418
TU472008 lncRNA upstream 16295 54850233 ~ 54850682 (-) True G416419
TU472017 lncRNA upstream 35730 54869668 ~ 54870186 (-) True G416428
XM_021603365.2 mRNA downstream 62182 54717326 ~ 54770286 (-) False slc44a5b
XM_036977856.1 mRNA downstream 62182 54717326 ~ 54770286 (-) False slc44a5b
XM_036977855.1 mRNA downstream 62182 54719507 ~ 54770286 (-) True slc44a5b
XM_021603366.2 mRNA downstream 62183 54719507 ~ 54770285 (-) False slc44a5b
XM_021603359.2 mRNA downstream 170614 54640281 ~ 54661854 (-) True erich3
XM_021603376.2 mRNA upstream 65158 54899096 ~ 54924751 (-) False LOC110524065
XM_036977860.1 mRNA upstream 65158 54899096 ~ 54924752 (-) True LOC110524065
XR_005051585.1 mRNA upstream 163748 54997686 ~ 55005447 (-) True LOC118964528
XM_021603380.2 mRNA upstream 217786 55051724 ~ 55071938 (-) True LOC110524068
XM_021603381.2 mRNA upstream 238147 55072085 ~ 55073951 (-) False LOC110524069
TU471641 other downstream 446240 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 826795 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 939562 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 1213604 53617738 ~ 53618864 (-) True G415256
TU470637 other downstream 1213709 53617683 ~ 53618759 (-) False G415256
TU472396 other upstream 307377 55141315 ~ 55160267 (-) True LOC110524071
TU473281 other upstream 774897 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 1874860 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 1876342 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 2000088 56834026 ~ 56834595 (-) True G418830

Expression Profile