RNA id: TU471947


Basic Information

Item Value
RNA id TU471947
length 2180
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G416362
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54835613 ~ 54837792 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGAGGACCAGAAGGTAGGCTTAAAACAGACGGTCATTTCTCTAAGTGTCAAAAGCTAGTGGAAATTCTTGGCAAATTTGAAATGTGAAGGTTATGAGGCGTTTCAGGAGATATTACTCATGTTTGCCCTGACACCTAGTGGGCTATTTGTGTCCTCCATCTGTATGGACTGGTCTGTGGGTGCGGGAGAATGAATGTCTTGTCGTCTATTACTGTTTTAACGTGGATTGTGGGCGTAGCGGGGGAACTTTGCAGTGTGTGGGTGGTCTATATGGACAACAATTGTTCCAATCACCCGAGGAAAATTGCAATTGCCACGTTTTCCGCCtttatgtgtttttcaccagtaGAATATAGACCCACCCTTTGTCTTCAGTGGATAGTTCATTGTTGACAAAATATTCTAAATATGGGCCTTACAGTCTGTGAGGAACCTTTATTATAGATCCATCTGCGAGGCCCTTATTTAAACTGGCAAGCCTGAAATGAACCTTTACCATGATAGACCAGCCTGTAAGGCCACTATTTGCTCTGATCAGCCTCCGAGGAGCCTTTATTAAAGACCATTAGACCAGCCTGTTAGGCCCATATTTACTCTGACCCGCCTGAGAGGAAACTATATTATCGATTAGCCTGTAAGGCCCCTATTTACTCAGATCAGCCTCAGAAGAGCATGTATTGTATTAGTTGTATGAATAGATAGCGCTATTTAACCAGCCAGCTAAGATACAGCTTGCTATATTAGCTCATTGCTCAAGAGAAAATAGCTAGCTAAGAAGTTAGCAGTGGTGTAGTACttgtgtaaaaatactttaaagtactacttaagtcgtttttgggggtatttgtactttacttttttaaccacttttacttttacttcactacattcctaaagaaaataatgtactttttactccatacattttccctgacacccaaaagtacttgatacattttgaatgcttagcaggacaggaaaatggtccaattcacacacttatcaagaaaacgtccctggccatccctactacctgatctggcggactccATAAACACAAATGTGTTGAGGTGTGCCACCAGCTAtccgtaaatgtaaaaaaaatattaaaaaatggtgtagtctggtttgcttaatatagggaatttgaaatgatttatatgtttacttttgatacttaagtatatctaaaatcaaatacttttagacttttactcaagtagtattttactgggtgattttcactttcacttgagtcattttctattaatgcATCTTTACTTTTGCTGAAGcgtgacaattgggtactttttccaccactggcattGGTAGCTCTAATTGCTGCATTATCTTGTCAGATTAAAAACATCAGCAAAATAGTCAATTTAGCTGCAAGCTCCTTTAAAAAGATAACCAACCAGCTAAATAGCTTAGATTATATATATATCAGCCTGTATAATGTCTAAGTAGTCTTGCTATTTCAGTGTTTTATATGTTAGCCAGTATAATTTCAAAACAGTCCAGCTATTTCAGTGTTTTATATGTTAGCCAGTATAATTTCAAAACAGTCCAGCTATTTCAGTGTTTTATATGTTAGCCAGTATAATTTCAAAACAGTCCAGCTATTTCAGTGTTTTATATGTTAGCCAGTATAATTTCAAAACAGTCCAGCCATTTCAGTGTTTTTGGATCAGCCAGCTAGATTAAATATTTCAAAATGGTTATTCTCGCTCTCCCCCTTTACATGTTTTAATTTGAATTGGCGTAGTTGCTTAAACATCAGCCTGTGAGGCAGCAGTGTGTAAACATCAGCCTGTGAGGCAGCAGTGTGTAAACATCAGCCTGTGAGGCAAACATAAGTCTGAGGGAGCAGTGCCTCACAGGCATAAGTCACTTGTGCTAGTAGTAGATTGTATTTGTTTTTCGCAATTATAGACTAAATTGTCGGTGGCGTGCTAAAATATGCTATTCCTGCCGTTGACCTGTGATGTTGTGTTCTTCAACAAAAAATAGGCAATATTCCTGTGTGTAAAGTTTCTGCAATGTCCCTGTAATGTTACTGCAATGTCCCTGTAATGTTACTGCAATGTCCCTGTAATGTTACTGCAATGTCCCTGTAATGTTTCTCGAATGTCCCTGTTAATGTTTCTACATCAAATAAAAGTGTATTGGTTGTgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU471519 lncRNA upstream 146731 54688582 ~ 54688882 (+) True G416005
TU471438 lncRNA upstream 222471 54590074 ~ 54613142 (+) False G415946
TU471452 lncRNA upstream 222471 54590074 ~ 54613142 (+) False G415946
TU471454 lncRNA upstream 222471 54610741 ~ 54613142 (+) True G415946
TU471401 lncRNA upstream 279277 54555076 ~ 54556336 (+) True G415914
TU471955 lncRNA downstream 1570 54839362 ~ 54839580 (+) True G416367
TU471965 lncRNA downstream 21238 54859030 ~ 54859350 (+) True G416377
TU471966 lncRNA downstream 21649 54859441 ~ 54859821 (+) True G416378
TU471970 lncRNA downstream 22355 54860147 ~ 54860415 (+) True G416382
TU471972 lncRNA downstream 23959 54861751 ~ 54862192 (+) True G416384
XM_021603368.2 mRNA upstream 1771 54818613 ~ 54833842 (+) False LOC110524062
XM_021603369.2 mRNA upstream 1771 54818613 ~ 54833842 (+) False LOC110524062
XM_021603370.2 mRNA upstream 1771 54818613 ~ 54833842 (+) True LOC110524062
XM_021603360.2 mRNA upstream 119404 54702112 ~ 54716209 (+) False LOC110524059
XM_021603362.2 mRNA upstream 119404 54702112 ~ 54716209 (+) False LOC110524059
XM_021603374.2 mRNA downstream 30579 54868371 ~ 54876340 (+) False LOC110524063
XM_021603372.2 mRNA downstream 31893 54869685 ~ 54876340 (+) False LOC110524063
XM_036977857.1 mRNA downstream 32194 54869986 ~ 54876340 (+) False LOC110524063
XM_021603373.2 mRNA downstream 32204 54869996 ~ 54876340 (+) False LOC110524063
XM_021603371.2 mRNA downstream 32245 54870037 ~ 54876340 (+) False LOC110524063
TU471439 other upstream 222471 54590074 ~ 54613142 (+) False G415946
TU471449 other upstream 222471 54590074 ~ 54613142 (+) False G415946
TU471274 other upstream 484998 54346536 ~ 54350615 (+) False mutyh
TU471261 other upstream 505133 54330080 ~ 54330480 (+) True G415809
TU471260 other upstream 505833 54329195 ~ 54329780 (+) True G415808
TU472519 other downstream 486853 55324645 ~ 55325271 (+) True G416857
TU473866 other downstream 1780098 56617890 ~ 56628617 (+) True G418077
TU473915 other downstream 1888393 56726185 ~ 56729821 (+) True G418119
TU474058 other downstream 2086132 56923924 ~ 56925176 (+) True G418251
TU474030 other downstream 2106046 56943838 ~ 56958165 (+) True LOC100135807

Expression Profile