RNA id: TU472017


Basic Information

Item Value
RNA id TU472017
length 519
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G416428
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54869668 ~ 54870186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCACTTTTTCCAGCGCATACTTCACTATTTCGACACCTCAAATAGGTCTCCTATATATGCATCCCAGCAAGAAGTGATTCATTAACATTCATATTCTCCACTCCAATTTTAGTCAATTTCCTTTTTGTTCCAGTTTTCGATACTAGTGTTGTCCATTCATAACATTAATCTTCACAAACTTTGCCCGACGCGCTGCTTAATTCGAACTCATCATCCAATCCGCTGTCTTCGACTGACCCATTTCTTCTTCTTCGAGTGGTTTTCCAGCCGCCTGGACGCTTTGTTGCGTATTGCCAttgagtttctaaacccagaagCGCAACATTGCAAGACTTCCGGGAAACAGCTTGCGAAAATAGACCAAATATCCAAGCCGGTGTTTGAGGAGTAAATGAGAGAAGTGAACAAATATTTTTCTCGAAATCtgaaggcacaacctagattcgagcAAACGGCCTAAGTAGtcgaacatgttattactccaaccttgtgaaagtgacaaattgacacgttttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472008 lncRNA downstream 18986 54850233 ~ 54850682 (-) True G416419
TU472006 lncRNA downstream 19680 54847358 ~ 54849988 (-) True G416418
TU472005 lncRNA downstream 23122 54846084 ~ 54846546 (-) True G416417
TU471996 lncRNA downstream 32952 54835216 ~ 54836716 (-) True G416408
TU471997 lncRNA downstream 35730 54832468 ~ 54833938 (-) True G416409
TU472016 lncRNA upstream 3816 54874002 ~ 54876338 (-) True G416427
TU472021 lncRNA upstream 6270 54876456 ~ 54876692 (-) True G416432
TU472085 lncRNA upstream 17325 54887511 ~ 54888514 (-) False G416481
TU472082 lncRNA upstream 17360 54887546 ~ 54888514 (-) False G416481
TU472083 lncRNA upstream 17360 54887546 ~ 54888514 (-) True G416481
XM_021603365.2 mRNA downstream 99382 54717326 ~ 54770286 (-) False slc44a5b
XM_036977856.1 mRNA downstream 99382 54717326 ~ 54770286 (-) False slc44a5b
XM_036977855.1 mRNA downstream 99382 54719507 ~ 54770286 (-) True slc44a5b
XM_021603366.2 mRNA downstream 99383 54719507 ~ 54770285 (-) False slc44a5b
XM_021603359.2 mRNA downstream 207814 54640281 ~ 54661854 (-) True erich3
XM_021603376.2 mRNA upstream 28910 54899096 ~ 54924751 (-) False LOC110524065
XM_036977860.1 mRNA upstream 28910 54899096 ~ 54924752 (-) True LOC110524065
XR_005051585.1 mRNA upstream 127500 54997686 ~ 55005447 (-) True LOC118964528
XM_021603380.2 mRNA upstream 181538 55051724 ~ 55071938 (-) True LOC110524068
XM_021603381.2 mRNA upstream 201899 55072085 ~ 55073951 (-) False LOC110524069
TU471641 other downstream 483440 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 863995 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 976762 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 1250804 53617738 ~ 53618864 (-) True G415256
TU470637 other downstream 1250909 53617683 ~ 53618759 (-) False G415256
TU472396 other upstream 271129 55141315 ~ 55160267 (-) True LOC110524071
TU473281 other upstream 738649 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 1838612 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 1840094 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 1963840 56834026 ~ 56834595 (-) True G418830

Expression Profile