RNA id: TCONS_00031580


Basic Information

Item Value
RNA id TCONS_00031580
length 1658
RNA type mRNA
GC content 0.49
exon number 9
gene id XLOC_015917
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 50391331 ~ 50409763 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCAGACTAACCTCATCGCAGAGCTACAATAACCATAAACTCCATCATGTCTACCTCTTCATATAGAAAGAGATTCGGAGATGTGTCCCGGAGCAGCGCTTTATCCAGTCGCCAGACTTTCAGCTCCTCCGCGCGCACACGAGTGTCTTTTGGCGCGTCCTCGTCTCCGGTTATTTACGCGTCGAAAAGCGCCAAAGTCCGAAGTAGCGCTGCCATGCCACGACTTACATCCGAGACTTTGGATTTTAACCTCTCGGACGCTTTAAACACGGAATTCAAGGCGAATAGACTGAATGAAAAGGCGCAGATGCAGTCGCTGAATGACCGCTTCGCTAGTTACATCGAGAAGGTGCGCTTTCTGGAGCAGCAGAATAAGATCCTGAGCGCGGAGCTGGAGCAGCTGAGGGGTCAGAGGTCATCTCGCATCGCAGATCTCTATGAGGAGGAGATGCGGGATCTGAGGCGGCAGGTGGATCTGCTGACCACCGAGAAAACACGAGCTGAAGTGATGCGAGACAACCTGGCTGAAGATGTAGAGCGACTCAAAGAGAAACTGCAGGACGAGATGCTTCAGCGGGAAGATGCAGAGAACAGCATGAAGAGTTTCAGACAGGACGTGGACAATGCGGCTCTTGCTCGAGTGGATCTGGAGAGGAAAGTGGAGTCTCTTCAGGACGAACTGGCCTTCCTGAAAAACCTCCATGATGAGgAGCTGGCAGAGCTGCAGACTCAGATTCAGGgccagcaggtgcaggtggagatGGACATGGCTAAACCTGATCTGACAGCCGCTCTCAGAGACGTCAGACTGCAGTATGAAAACCTGGCAAGCAAAAACATACAGGAGTCAGAGGACTGGTACAAATCCAAGTTTGCAGACCTGACCGAAGCTGCTAACAGAAATAATGAAGCTCTGCGACTGGCCAAGCAGGAGACCAATGAGTACCGGCGTCAGGTGCAGGCGATCACCTGTGAACTGGACGCTCTCAGAGGAACAAACGAGTCTCTAGAGCGTCAGATGCGGGAGATGGAGGAGAACTTCAGCATGGAGTCATCTGGTTTTCAGAACACCATCGGCCGGCTGGAGGAGGACATTGGCAACATGAAGGACGAGATGGCGAGACACCTGCGTGAATACCAGGACCTGCTCAACGTCAAGATGGCGCTGGACATCGAGATCGCAACCTACAGAAAACTGCTGGAGGGAGAGGAGAGCAGAATTGCTGCTCCTCTTCCAAACTTCTCCTCCTTTAATCTGAGAGaAACAATGCTTGAGTCCAAGCTTGTTCCTGAAAACACATTTACTAAGAAAGTTCTTATTAAAACCATTGAGACCAGAGATGGCAAGGTGATCAATGAGTCGACGCAGAACCACGATGATCTGGAGTGATGAAGCTGTAAATCTCTTTGAATCCTGAATCTCAGCTCAGTCTGATGGGAAAACACAGTGTCCTGCTTCTGAGTGCCTTTACCTGCTGTAAGATGTGTAATGAGGAAACAAGAACTTTAGCAAACTGTGAATCTTTTTACTGTCTCTCAACCTGCGTTCACTTTCCACAtactgtagcatttctgagcCAACCTAATGCAGTCTGAGCAAAATGCTTGAATAAAAACAGTCTTAGAAAAGTTTGCATTTCTAATAAACCTTCATTTGCT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005882 intermediate filament cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1743 Predicted to be located in intermediate filament.

Ensembl:

ensembl_id ENSDART00000098108

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033684 lncRNA upstream 112090 50274078 ~ 50279241 (+) False XLOC_015916
TCONS_00033685 lncRNA upstream 112090 50274109 ~ 50279241 (+) True XLOC_015916
TCONS_00031574 lncRNA upstream 526303 49860954 ~ 49865028 (+) False XLOC_015913
TCONS_00033315 lncRNA upstream 1578651 48809596 ~ 48812680 (+) True XLOC_015900
TCONS_00033314 lncRNA upstream 1580467 48808837 ~ 48810864 (+) False XLOC_015900
TCONS_00033316 lncRNA downstream 198301 50608064 ~ 50629155 (+) False XLOC_015920
TCONS_00033317 lncRNA downstream 282121 50691884 ~ 50692346 (+) True XLOC_015921
TCONS_00033686 lncRNA downstream 489047 50898810 ~ 50899927 (+) True XLOC_015923
TCONS_00031597 lncRNA downstream 589945 50999708 ~ 51028786 (+) False XLOC_015925
TCONS_00031602 lncRNA downstream 661936 51071699 ~ 51079083 (+) True XLOC_015926
TCONS_00031578 mRNA upstream 291349 50094873 ~ 50099982 (+) True XLOC_015914
TCONS_00031577 mRNA upstream 295816 50062290 ~ 50095515 (+) False XLOC_015914
TCONS_00031576 mRNA upstream 322556 50062165 ~ 50068775 (+) False XLOC_015914
TCONS_00031575 mRNA upstream 519755 49864219 ~ 49871576 (+) True XLOC_015913
TCONS_00031573 mRNA upstream 524543 49860722 ~ 49866788 (+) False XLOC_015913
TCONS_00031581 mRNA downstream 68016 50477779 ~ 50576188 (+) True XLOC_015918
TCONS_00031584 mRNA downstream 198336 50608099 ~ 50629155 (+) False XLOC_015920
TCONS_00031583 mRNA downstream 198336 50608099 ~ 50629155 (+) False XLOC_015920
TCONS_00031585 mRNA downstream 216713 50626476 ~ 50629155 (+) True XLOC_015920
TCONS_00031586 mRNA downstream 312676 50722439 ~ 50765082 (+) False XLOC_015922
TCONS_00031579 other upstream 188036 50202638 ~ 50203295 (+) True XLOC_015915
TCONS_00031572 other upstream 534538 49855746 ~ 49856793 (+) True XLOC_015912
TCONS_00031564 other upstream 743342 49646958 ~ 49647989 (+) True XLOC_015908
TCONS_00031539 other upstream 2126729 48263750 ~ 48264602 (+) True XLOC_015891
TCONS_00031532 other upstream 2447839 47942191 ~ 47943492 (+) True XLOC_015885
TCONS_00031582 other downstream 180569 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031589 other downstream 452764 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031613 other downstream 1712957 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031622 other downstream 3276308 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031635 other downstream 4345409 54755172 ~ 54786740 (+) False XLOC_015963

Expression Profile

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