RNA id: TU472139


Basic Information

Item Value
RNA id TU472139
length 932
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G416530
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54951507 ~ 54952438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctatggtgttgaatgccgagctgtagtcaatgaacagcattctcacataggtattcctcttgtccagatgggttagggcggtgtgcagtgtggttgagattgcatcgtctgtggacctatttgggtggtaagcaaattggagtgggtctagggtgtcaggtagggtggaggtgatatggtccttgactagtctctcaaagcacttcatgatgacggaagtgagtgctacggggcggtagtcgtttagctcagttaccttagctttcttgggaacaggaacaatggtggccctcttgaagcatgtgggaacagcagactggtatagggattgattgaatatgtccgtaaacacaccggccagctggtctgcgcatgctctgagggcgcggctggggatgccgtctgggcctgcagccttgcgagggttaacacgtttaaatgtcttactcacctcggctgcagtgaaggagagaccgcatgttttcgttgccggccgtgtcagtggcactgtattgtcctcaaagcgggcaaaaaagttatttagtctgcctgggagcaggacatcctggtccgtgactgggctggatttcttcctgtagtccgtgattgactgtagaccctgccacatgcctcttgtgtctgagccgttgaattgagattctactttgtctctgtactgacgcttagcttgtttgatagccttgcggagggaatagctgcactgtttgtattcggtcatgttaccagacaccttgccctgattaaaagcagtggttcgcgctttcagtttcacgtgaatgctgccatcaatccacggtttctggttagggaatgttttaatcgttgctatgggaacgacatcttcaacgcacgttctaatgaactcacacaccgaatcagcgtattcgtcaatgttgttgtctgacacaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472130 lncRNA downstream 13265 54937276 ~ 54938242 (-) True G416521
TU472085 lncRNA downstream 62993 54887511 ~ 54888514 (-) False G416481
TU472082 lncRNA downstream 62993 54887546 ~ 54888514 (-) False G416481
TU472083 lncRNA downstream 62993 54887546 ~ 54888514 (-) True G416481
TU472021 lncRNA downstream 74815 54876456 ~ 54876692 (-) True G416432
TU472160 lncRNA upstream 10616 54963054 ~ 54963291 (-) True G416544
TU472161 lncRNA upstream 11052 54963490 ~ 54963703 (-) True G416545
TU472300 lncRNA upstream 27995 54980433 ~ 54981243 (-) True G416673
TU472323 lncRNA upstream 65917 55018355 ~ 55018559 (-) True G416696
TU472336 lncRNA upstream 90393 55042831 ~ 55043076 (-) True G416709
XM_036977860.1 mRNA downstream 26755 54899096 ~ 54924752 (-) True LOC110524065
XM_021603376.2 mRNA downstream 26756 54899096 ~ 54924751 (-) False LOC110524065
XM_036977856.1 mRNA downstream 181221 54717326 ~ 54770286 (-) False slc44a5b
XR_005051585.1 mRNA upstream 45248 54997686 ~ 55005447 (-) True LOC118964528
XM_021603380.2 mRNA upstream 99286 55051724 ~ 55071938 (-) True LOC110524068
XM_021603381.2 mRNA upstream 119647 55072085 ~ 55073951 (-) False LOC110524069
XM_036977864.1 mRNA upstream 150521 55102959 ~ 55122187 (-) False si:ch211-221n20.8
XM_036977866.1 mRNA upstream 150521 55102959 ~ 55122188 (-) False si:ch211-221n20.8
TU471641 other downstream 565279 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 945834 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 1058601 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 1332643 53617738 ~ 53618864 (-) True G415256
TU470637 other downstream 1332748 53617683 ~ 53618759 (-) False G415256
TU472396 other upstream 188877 55141315 ~ 55160267 (-) True LOC110524071
TU473281 other upstream 656397 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 1756360 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 1757842 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 1881588 56834026 ~ 56834595 (-) True G418830

Expression Profile