RNA id: TU472160


Basic Information

Item Value
RNA id TU472160
length 238
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G416544
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54963054 ~ 54963291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

attttatgtttgttcaatggacaaaaaaatgtggttttctttcaaaaacaaggacatttagtgactccaaacttttgaacggtacatgtgggtaggggtaaagtgactatgcatgtataataaacagagagtagcagagtgtgaaggaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgcgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU472139 lncRNA downstream 10616 54951507 ~ 54952438 (-) True G416530
TU472130 lncRNA downstream 24812 54937276 ~ 54938242 (-) True G416521
TU472085 lncRNA downstream 74540 54887511 ~ 54888514 (-) False G416481
TU472082 lncRNA downstream 74540 54887546 ~ 54888514 (-) False G416481
TU472083 lncRNA downstream 74540 54887546 ~ 54888514 (-) True G416481
TU472161 lncRNA upstream 199 54963490 ~ 54963703 (-) True G416545
TU472300 lncRNA upstream 17142 54980433 ~ 54981243 (-) True G416673
TU472323 lncRNA upstream 55064 55018355 ~ 55018559 (-) True G416696
TU472336 lncRNA upstream 79540 55042831 ~ 55043076 (-) True G416709
TU472339 lncRNA upstream 82698 55045989 ~ 55067110 (-) True G416712
XM_036977860.1 mRNA downstream 38302 54899096 ~ 54924752 (-) True LOC110524065
XM_021603376.2 mRNA downstream 38303 54899096 ~ 54924751 (-) False LOC110524065
XM_036977856.1 mRNA downstream 192768 54717326 ~ 54770286 (-) False slc44a5b
XR_005051585.1 mRNA upstream 34395 54997686 ~ 55005447 (-) True LOC118964528
XM_021603380.2 mRNA upstream 88433 55051724 ~ 55071938 (-) True LOC110524068
XM_021603381.2 mRNA upstream 108794 55072085 ~ 55073951 (-) False LOC110524069
XM_036977864.1 mRNA upstream 139668 55102959 ~ 55122187 (-) False si:ch211-221n20.8
XM_036977866.1 mRNA upstream 139668 55102959 ~ 55122188 (-) False si:ch211-221n20.8
TU471641 other downstream 576826 54363286 ~ 54386228 (-) False G416110
TU470869 other downstream 957381 54003731 ~ 54005673 (-) True G415464
TU470822 other downstream 1070148 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 1344190 53617738 ~ 53618864 (-) True G415256
TU470637 other downstream 1344295 53617683 ~ 53618759 (-) False G415256
TU472396 other upstream 178024 55141315 ~ 55160267 (-) True LOC110524071
TU473281 other upstream 645544 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 1745507 56708798 ~ 56709840 (-) False LOC110522975
TU474560 other upstream 1746989 56710280 ~ 56711384 (-) True LOC110522975
TU474707 other upstream 1870735 56834026 ~ 56834595 (-) True G418830

Expression Profile